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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.226555 (118 seq.)
>W1710805054
LJZS01000001
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
222314
222238
-
Asp
GTC
[ENA]
¡û
>W1710805055
LJZS01000001
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
222196
222120
-
Asp
GTC
[ENA]
¡û
>W1710805057
LJZS01000001
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
221932
221856
-
Asp
GTC
[ENA]
¡û
>W1710943792
LOPZ01000090
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
104966
105042
+
Asp
GTC
[ENA]
¡û
>W1711144260
LVIA01000016
Gammaproteobacteria
Halomonas sp. KX33721 [LVIA]
152945
152869
-
Asp
GTC
[ENA]
¡û
>W1711261919
LYXG01000013
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
114091
114167
+
Asp
GTC
[ENA]
¡û
>W1711261920
LYXG01000013
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
114208
114284
+
Asp
GTC
[ENA]
¡û
>W1711261922
LYXG01000013
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
114472
114548
+
Asp
GTC
[ENA]
¡û
>W1711312211
MASR01000002
Gammaproteobacteria
Pseudohongiella acticola [MASR]
209158
209082
-
Asp
GTC
[ENA]
¡û
>W1711361368
MDLD01000090
Gammaproteobacteria
Endozoicomonas sp. (ex Bugula neritina AB1) [MDLD]
7133
7209
+
Asp
GTC
[ENA]
¡û
>W1711688879
MSDO01000092
Gammaproteobacteria
Salinicola socius [MSDO]
153
229
+
Asp
GTC
[ENA]
¡û
>W1711688944
MSDP01000046
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
626
550
-
Asp
GTC
[ENA]
¡û
>W1711688946
MSDP01000046
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
423
347
-
Asp
GTC
[ENA]
¡û
>W1711688969
MSDP01000110
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
494
418
-
Asp
GTC
[ENA]
¡û
>W1711688970
MSDP01000110
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
310
234
-
Asp
GTC
[ENA]
¡û
>W1712082093
NHOU01000003
Gammaproteobacteria
Salinicola salarius [NHOU]
179207
179131
-
Asp
GTC
[ENA]
¡û
>W1712082094
NHOU01000003
Gammaproteobacteria
Salinicola salarius [NHOU]
179026
178950
-
Asp
GTC
[ENA]
¡û
>C171100903
CP019915
Gammaproteobacteria
Halomonas sp. 'Soap Lake #7' [CP019915]
78953
79029
+
Asp
GTC
-
¡û
>C171109352
CP020562
Gammaproteobacteria
Halomonas sp. GT [CP020562]
3207647
3207571
-
Asp
GTC
-
¡û
>W131174813
ARIT01000017
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
49464
49540
+
Asp
GTC
[ENA]
¡û
>W131174814
ARIT01000017
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
49580
49656
+
Asp
GTC
[ENA]
¡û
>W131174816
ARIT01000017
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
49829
49905
+
Asp
GTC
[ENA]
¡û
>w016568
AAQH01000001
Gammaproteobacteria
Bermanella marisrubri RED65 [AAQH]
304707
304629
-
Asp
GTC
[ENA]
¡û
>w016566
AAQH01000001
Gammaproteobacteria
Bermanella marisrubri RED65 [AAQH]
304917
304839
-
Asp
GTC
[ENA]
¡û
>w016564
AAQH01000001
Gammaproteobacteria
Bermanella marisrubri RED65 [AAQH]
305141
305063
-
Asp
GTC
[ENA]
¡û
>WENV180385937
OBPB01007541
[OBPB] marine metagenome; Sterile flask
89
13
-
Asp
GTC
[ENA]
¢þ
>WENV181233798
OFET01000110
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
115729
115805
+
Asp
GTC
[ENA]
¢þ
>WENV182544599
OJBI01000083
[OJBI] seawater metagenome; Sea water
27885
27961
+
Asp
GTC
[ENA]
¢þ
>WENV182545128
OJBM01000181
[OJBM] seawater metagenome; Sea water
26256
26332
+
Asp
GTC
[ENA]
¢þ
>WENV182548813
OJBX01000229
[OJBX] seawater metagenome; Sea water
28517
28593
+
Asp
GTC
[ENA]
¢þ
>WENV182560003
OJDR01000140
[OJDR] seawater metagenome; Sea water
25075
25151
+
Asp
GTC
[ENA]
¢þ
>WENV182577380
OJGD01006202
[OJGD] seawater metagenome; Sea water
4
80
+
Asp
GTC
[ENA]
¢þ
>W141279782
JAGO01000011
Gammaproteobacteria
Carnimonas nigrificans ATCC BAA-78 [JAGO]
284068
284144
+
Asp
GTC
[ENA]
¡û
>WENV183053756
OLGQ01003252
[OLGQ] seawater metagenome; Sea water
229
305
+
Asp
GTC
[ENA]
¢þ
>WENV183056748
OLHJ01010524
[OLHJ] seawater metagenome; Sea water
133
57
-
Asp
GTC
[ENA]
¢þ
>WENV183058277
OLHP01000267
[OLHP] seawater metagenome; Sea water
195
119
-
Asp
GTC
[ENA]
¢þ
>WENV183062180
OLID01000269
[OLID] seawater metagenome; Sea water
18045
17969
-
Asp
GTC
[ENA]
¢þ
>WENV183064829
OLII01001144
[OLII] seawater metagenome; Sea water
7959
7883
-
Asp
GTC
[ENA]
¢þ
>WENV183710568
PDWI01049321
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3369
3295
-
Asp
GTC
[ENA]
¢þ
>WENV170274836
CERM01045835
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2337
2413
+
Asp
GTC
[ENA]
¢þ
>WENV170278232
CERQ01069026
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
347
271
-
Asp
GTC
[ENA]
¢þ
>WENV170535492
CEWP01068088
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
443
519
+
Asp
GTC
[ENA]
¢þ
>WENV170550629
CXWF01005923
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
403
479
+
Asp
GTC
[ENA]
¢þ
>WENV170675597
LDZP01000084
[LDZP] terrestrial metagenome; oil reservoir sample I1
9339
9263
-
Asp
GTC
[ENA]
¢þ
>WENV170675598
LDZP01000084
[LDZP] terrestrial metagenome; oil reservoir sample I1
9228
9152
-
Asp
GTC
[ENA]
¢þ
>WENV170675600
LDZP01000084
[LDZP] terrestrial metagenome; oil reservoir sample I1
8982
8906
-
Asp
GTC
[ENA]
¢þ
>WENV170780189
MAAA01019425
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
944
1020
+
Asp
GTC
[ENA]
¢þ
>WENV170780213
MAAA01021541
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
607
683
+
Asp
GTC
[ENA]
¢þ
>WENV170780215
MAAA01021541
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
894
970
+
Asp
GTC
[ENA]
¢þ
>WENV170780216
MAAA01021541
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
1035
1111
+
Asp
GTC
[ENA]
¢þ
>WENV170780287
MAAA01027462
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
1447
1371
-
Asp
GTC
[ENA]
¢þ
>WENV170780400
MAAB01000303
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4024
4100
+
Asp
GTC
[ENA]
¢þ
>WENV170780582
MAAB01007346
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1518
1594
+
Asp
GTC
[ENA]
¢þ
>WENV170780584
MAAB01007346
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1785
1861
+
Asp
GTC
[ENA]
¢þ
>WENV170781620
MAAB01039133
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1763
1687
-
Asp
GTC
[ENA]
¢þ
>WENV170781624
MAAB01039180
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4704
4628
-
Asp
GTC
[ENA]
¢þ
>WENV170781626
MAAB01039180
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4440
4364
-
Asp
GTC
[ENA]
¢þ
>WENV170781721
MAAB01042303
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1531
1607
+
Asp
GTC
[ENA]
¢þ
>WENV170783943
MAAC01019899
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2302
2378
+
Asp
GTC
[ENA]
¢þ
>WENV170783945
MAAC01019899
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2592
2668
+
Asp
GTC
[ENA]
¢þ
>WENV170815857
MDSX01018225
[MDSX] marine metagenome; seawater
7031
6955
-
Asp
GTC
[ENA]
¢þ
>WENV170817387
MDSX01049277
[MDSX] marine metagenome; seawater
8
84
+
Asp
GTC
[ENA]
¢þ
>WENV170858472
MDTB01023133
[MDTB] marine metagenome; seawater
163
87
-
Asp
GTC
[ENA]
¢þ
>C181044717
CP020469
Gammaproteobacteria
Halomonas sp. 'Soap Lake #6' [CP020469]
78953
79029
+
Asp
GTC
-
¡û
>C191028802
CP024811
Gammaproteobacteria
Halomonas alkaliphila X3 [CP024811]
2184604
2184680
+
Asp
GTC
-
¡û
>C191028803
CP024811
Gammaproteobacteria
Halomonas alkaliphila X3 [CP024811]
2184717
2184793
+
Asp
GTC
-
¡û
>C191123901
CP034367
Gammaproteobacteria
Halomonas venusta MA-ZP17-13 [CP034367]
3484045
3483969
-
Asp
GTC
-
¡û
>W141703444
JMMC01000010
Gammaproteobacteria
Halomonas sp. HL-48 [JMMC]
461353
461277
-
Asp
GTC
[ENA]
¡û
>W141703445
JMMC01000010
Gammaproteobacteria
Halomonas sp. HL-48 [JMMC]
461235
461159
-
Asp
GTC
[ENA]
¡û
>W141703447
JMMC01000010
Gammaproteobacteria
Halomonas sp. HL-48 [JMMC]
460971
460895
-
Asp
GTC
[ENA]
¡û
>W141802206
JPEU01000007
Gammaproteobacteria
Halomonas sp. SUBG004 [JPEU]
148493
148569
+
Asp
GTC
[ENA]
¡û
>W141802224
JPEU01000112
Gammaproteobacteria
Halomonas sp. SUBG004 [JPEU]
82
158
+
Asp
GTC
[ENA]
¡û
>W1910184150
BJOI01000014
Gammaproteobacteria
Halomonas meridiana NBRC 15608 [BJOI]
63366
63290
-
Asp
GTC
[ENA]
¡û
>W1910339621
FTLE01000006
Gammaproteobacteria
Halomonas massiliensis Marseille-P2426 [FTLE]
369239
369315
+
Asp
GTC
[ENA]
¡û
>W1910339622
FTLE01000006
Gammaproteobacteria
Halomonas massiliensis Marseille-P2426 [FTLE]
369357
369433
+
Asp
GTC
[ENA]
¡û
>W1910339624
FTLE01000006
Gammaproteobacteria
Halomonas massiliensis Marseille-P2426 [FTLE]
369576
369652
+
Asp
GTC
[ENA]
¡û
>W1910377539
FUKM01000011
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
120354
120430
+
Asp
GTC
[ENA]
¡û
>W1911245387
NSKA01000004
Gammaproteobacteria
Halomonas humidisoli WN018 [NSKA]
439813
439737
-
Asp
GTC
[ENA]
¡û
>W1911245388
NSKA01000004
Gammaproteobacteria
Halomonas humidisoli WN018 [NSKA]
439700
439624
-
Asp
GTC
[ENA]
¡û
>W1911411729
NWUX01000015
Gammaproteobacteria
Halomonas nigrificans MBT G8648 [NWUX]
81993
81917
-
Asp
GTC
[ENA]
¡û
>W1810364637
PVTK01000001
Gammaproteobacteria
Halomonas songnenensis CGMCC 1.12152 [PVTK]
874643
874567
-
Asp
GTC
[ENA]
¡û
>W1810364638
PVTK01000001
Gammaproteobacteria
Halomonas songnenensis CGMCC 1.12152 [PVTK]
874527
874451
-
Asp
GTC
[ENA]
¡û
>W1810364640
PVTK01000001
Gammaproteobacteria
Halomonas songnenensis CGMCC 1.12152 [PVTK]
874270
874194
-
Asp
GTC
[ENA]
¡û
>W1810444127
PZJL01000008
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
60457
60533
+
Asp
GTC
[ENA]
¡û
>W1810444199
PZJM01000013
Gammaproteobacteria
Salinicola lusitanus CR50 [PZJM]
60591
60667
+
Asp
GTC
[ENA]
¡û
>W1810444215
PZJN01000001
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
206609
206533
-
Asp
GTC
[ENA]
¡û
>W1810444216
PZJN01000001
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
206425
206349
-
Asp
GTC
[ENA]
¡û
>W1810444218
PZJN01000001
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
206222
206146
-
Asp
GTC
[ENA]
¡û
>W1810444525
PZJS01000001
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
414807
414731
-
Asp
GTC
[ENA]
¡û
>W1810758281
QPIJ01000005
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
8318
8242
-
Asp
GTC
[ENA]
¡û
>W1810758282
QPIJ01000005
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
8195
8119
-
Asp
GTC
[ENA]
¡û
>W1810758283
QPIJ01000005
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
8072
7996
-
Asp
GTC
[ENA]
¡û
>W1810758285
QPIJ01000005
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
7852
7776
-
Asp
GTC
[ENA]
¡û
>C151033779
CP007757
Gammaproteobacteria
Halomonas campaniensis LS21 [CP007757]
464251
464175
-
Asp
GTC
[Ensembl]
¡û
>C151033780
CP007757
Gammaproteobacteria
Halomonas campaniensis LS21 [CP007757]
464138
464062
-
Asp
GTC
[Ensembl]
¡û
>W1511541336
JZEM01000007
Gammaproteobacteria
Halomonas meridiana R1t3 [JZEM]
66336
66260
-
Asp
GTC
[ENA]
¡û
>C161109434
LT593974
Gammaproteobacteria
Halomonas sp. HL-93 [LT593974]
806311
806387
+
Asp
GTC
-
¡û
>C161109435
LT593974
Gammaproteobacteria
Halomonas sp. HL-93 [LT593974]
806429
806505
+
Asp
GTC
-
¡û
>C161109437
LT593974
Gammaproteobacteria
Halomonas sp. HL-93 [LT593974]
806693
806769
+
Asp
GTC
-
¡û
>W121023754
AHBC01000005
Gammaproteobacteria
Halomonas sp. GFAJ-1 [AHBC]
34947
35023
+
Asp
GTC
[ENA]
¡û
>W121023755
AHBC01000005
Gammaproteobacteria
Halomonas sp. GFAJ-1 [AHBC]
35059
35135
+
Asp
GTC
[ENA]
¡û
>W121023757
AHBC01000005
Gammaproteobacteria
Halomonas sp. GFAJ-1 [AHBC]
35305
35381
+
Asp
GTC
[ENA]
¡û
>W1610041624
BAWY01000006
Gammaproteobacteria
Halomonas sp. JCM 19032 [BAWY]
18188
18264
+
Asp
GTC
[ENA]
¡û
>W1610551226
JYFV01000014
Gammaproteobacteria
Halomonas axialensis [JYFV]
13839
13915
+
Asp
GTC
[ENA]
¡û
>W1610668911
LJZS01000001
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
222314
222238
-
Asp
GTC
[ENA]
¡û
>W1610668912
LJZS01000001
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
222196
222120
-
Asp
GTC
[ENA]
¡û
>W1610668914
LJZS01000001
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
221932
221856
-
Asp
GTC
[ENA]
¡û
>W1610800092
LOPZ01000090
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
104966
105042
+
Asp
GTC
[ENA]
¡û
>W1610955268
LVIA01000016
Gammaproteobacteria
Halomonas sp. KX33721 [LVIA]
152945
152869
-
Asp
GTC
[ENA]
¡û
>W1611023842
LYXG01000013
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
114091
114167
+
Asp
GTC
[ENA]
¡û
>W1611023843
LYXG01000013
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
114208
114284
+
Asp
GTC
[ENA]
¡û
>W1611023845
LYXG01000013
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
114472
114548
+
Asp
GTC
[ENA]
¡û
>W1710038718
BAWY01000006
Gammaproteobacteria
Halomonas sp. JCM 19032 [BAWY]
18188
18264
+
Asp
GTC
[ENA]
¡û
>W1710552229
FOGS01000003
Gammaproteobacteria
Halomonas subterranea [FOGS]
196166
196090
-
Asp
GTC
[ENA]
¡û
>W1710552230
FOGS01000003
Gammaproteobacteria
Halomonas subterranea [FOGS]
195964
195888
-
Asp
GTC
[ENA]
¡û
>W1710593973
FSQX01000001
Gammaproteobacteria
Halomonas meridiana [FSQX]
2493735
2493659
-
Asp
GTC
[ENA]
¡û
>W1710595048
FSRR01000001
Gammaproteobacteria
Halomonas meridiana [FSRR]
3616289
3616365
+
Asp
GTC
[ENA]
¡û
>W1710661499
JYFV01000014
Gammaproteobacteria
Halomonas axialensis [JYFV]
13839
13915
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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