This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.227314 (17 seq.)
>C171074594
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1071876
1071952
+
Arg
TCT
-
¡û
>C171074646
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1071625
1071701
+
Arg
TCT
-
¡û
>C171074698
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1068034
1068110
+
Arg
TCT
-
¡û
>C171074750
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1071877
1071953
+
Arg
TCT
-
¡û
>C171074802
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1063069
1063145
+
Arg
TCT
-
¡û
>C009824
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1063063
1063139
+
Arg
TCT
[Ensembl]
¡û
>C019119
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
1934676
1934752
+
Arg
TCT
[Ensembl]
¡û
>WENV180015871
FSTO01000237
[FSTO] metagenome; soil
112
188
+
Arg
TCT
[ENA]
¢þ
>WENV180030624
FTJN01001349
[FTJN] metagenome; soil
1209
1133
-
Arg
TCT
[ENA]
¢þ
>WENV180030706
FTJN01003206
[FTJN] metagenome; soil
47694
47770
+
Arg
TCT
[ENA]
¢þ
>w001351
AAAG02000002
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
12879
12806
-
Arg
TCT
[ENA]
¡û
>WENV170609621
FUWD011451951
[FUWD] metagenome; unknown
127
203
+
Arg
TCT
[ENA]
¢þ
>C151004014
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1096458
1096534
+
Arg
TCT
[Ensembl]
¡û
>C151004089
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2376727
2376651
-
Arg
TCT
[Ensembl]
¡û
>C151004141
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2352829
2352753
-
Arg
TCT
[Ensembl]
¡û
>C11118833
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
1934676
1934752
+
Arg
TCT
[Ensembl]
¡û
>W121086763
AKKF01000133
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
1526
1450
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK