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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.227487 (102 seq.)
>W1710931157
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
7009
7085
+
Pro
TGG
[ENA]
¡û
>W1710931181
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
20596
20520
-
Pro
TGG
[ENA]
¡û
>W1710931185
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
20199
20123
-
Pro
TGG
[ENA]
¡û
>W131187790
ARZA01000238
Bacillota
Caldisalinibacter kiritimatiensis L21-TH-D2 [ARZA]
139
63
-
Pro
TGG
[ENA]
¡û
>C171059798
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3236594
3236670
+
Pro
TGG
-
¡û
>C171059824
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
3956453
3956529
+
Pro
TGG
-
¡û
>C171059849
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
2743418
2743342
-
Pro
TGG
-
¡û
>C171059857
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
2290908
2290832
-
Pro
TGG
-
¡û
>C171059906
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
619009
618933
-
Pro
TGG
-
¡û
>W131187757
ARZA01000051
Bacillota
Caldisalinibacter kiritimatiensis L21-TH-D2 [ARZA]
498
422
-
Pro
TGG
[ENA]
¡û
>W131187795
ARZA01000282
Bacillota
Caldisalinibacter kiritimatiensis L21-TH-D2 [ARZA]
890
966
+
Pro
TGG
[ENA]
¡û
>WENV180042320
LQAE01000363
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
7298
7222
-
Pro
TGG
[ENA]
¢þ
>WENV180042323
LQAE01000412
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
5782
5858
+
Pro
TGG
[ENA]
¢þ
>WENV180042428
LQAE01018555
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
256
180
-
Pro
TGG
[ENA]
¢þ
>WENV180042722
LQAG01000197
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
23392
23316
-
Pro
TGG
[ENA]
¢þ
>WENV180042743
LQAG01000366
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
13931
14007
+
Pro
TGG
[ENA]
¢þ
>WENV180042900
LQAG01012363
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
267
343
+
Pro
TGG
[ENA]
¢þ
>WENV180043044
LQAH01000606
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3870
3794
-
Pro
TGG
[ENA]
¢þ
>WENV180043262
LQAH01017218
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
181
105
-
Pro
TGG
[ENA]
¢þ
>WENV180043563
LQAI01000783
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
743
667
-
Pro
TGG
[ENA]
¢þ
>WENV180043571
LQAI01000844
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
5102
5026
-
Pro
TGG
[ENA]
¢þ
>WENV180043620
LQAI01002715
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
1206
1130
-
Pro
TGG
[ENA]
¢þ
>WENV180043669
LQAI01006274
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
449
525
+
Pro
TGG
[ENA]
¢þ
>WENV180043854
LQAJ01000012
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
75807
75883
+
Pro
TGG
[ENA]
¢þ
>WENV180043997
LQAJ01000188
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
23408
23332
-
Pro
TGG
[ENA]
¢þ
>WENV180044117
LQAJ01005729
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
731
807
+
Pro
TGG
[ENA]
¢þ
>WENV180044219
LQAJ01023519
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
268
344
+
Pro
TGG
[ENA]
¢þ
>WENV183704514
PDWI01000327
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
75441
75517
+
Pro
TGG
[ENA]
¢þ
>WENV183704709
PDWI01000535
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
48563
48487
-
Pro
TGG
[ENA]
¢þ
>WENV183704841
PDWI01000684
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3054
3130
+
Pro
TGG
[ENA]
¢þ
>WENV183705426
PDWI01001534
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
35777
35701
-
Pro
TGG
[ENA]
¢þ
>WENV183705848
PDWI01002409
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
28052
28128
+
Pro
TGG
[ENA]
¢þ
>WENV183706063
PDWI01003018
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
17427
17503
+
Pro
TGG
[ENA]
¢þ
>WENV183706107
PDWI01003107
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
31883
31959
+
Pro
TGG
[ENA]
¢þ
>WENV183706453
PDWI01004295
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19000
19076
+
Pro
TGG
[ENA]
¢þ
>WENV183706570
PDWI01004723
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
18037
17961
-
Pro
TGG
[ENA]
¢þ
>WENV183706929
PDWI01005986
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15239
15315
+
Pro
TGG
[ENA]
¢þ
>WENV183707175
PDWI01007151
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12417
12341
-
Pro
TGG
[ENA]
¢þ
>WENV183707869
PDWI01011205
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
877
801
-
Pro
TGG
[ENA]
¢þ
>WENV183707880
PDWI01011254
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9338
9262
-
Pro
TGG
[ENA]
¢þ
>WENV183707885
PDWI01011283
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3827
3751
-
Pro
TGG
[ENA]
¢þ
>WENV183708081
PDWI01012827
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
99
23
-
Pro
TGG
[ENA]
¢þ
>WENV183708909
PDWI01021283
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6211
6287
+
Pro
TGG
[ENA]
¢þ
>WENV183709705
PDWI01032303
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
182
106
-
Pro
TGG
[ENA]
¢þ
>WENV183709784
PDWI01034019
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4455
4531
+
Pro
TGG
[ENA]
¢þ
>WENV183710373
PDWI01045184
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3631
3707
+
Pro
TGG
[ENA]
¢þ
>WENV183711563
PDWI01073080
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2570
2646
+
Pro
TGG
[ENA]
¢þ
>WENV183711661
PDWI01075675
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2192
2268
+
Pro
TGG
[ENA]
¢þ
>WENV183712851
PDWI01116240
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
323
247
-
Pro
TGG
[ENA]
¢þ
>WENV183713153
PDWI01126985
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
179
103
-
Pro
TGG
[ENA]
¢þ
>WENV183713630
PDWI01146066
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
166
90
-
Pro
TGG
[ENA]
¢þ
>WENV183714269
PDWI01175699
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
83
159
+
Pro
TGG
[ENA]
¢þ
>WENV183714537
PDWI01189595
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3
79
+
Pro
TGG
[ENA]
¢þ
>WENV183714692
PDWI01198114
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1124
1048
-
Pro
TGG
[ENA]
¢þ
>WENV183714838
PDWI01206104
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1193
1269
+
Pro
TGG
[ENA]
¢þ
>WENV183715070
PDWI01219963
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
446
370
-
Pro
TGG
[ENA]
¢þ
>WENV183715432
PDWI01240228
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
983
1059
+
Pro
TGG
[ENA]
¢þ
>WENV183715655
PDWI01253560
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1018
1094
+
Pro
TGG
[ENA]
¢þ
>WENV183715992
PDWI01278740
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
906
982
+
Pro
TGG
[ENA]
¢þ
>WENV183716095
PDWI01286174
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
87
11
-
Pro
TGG
[ENA]
¢þ
>WENV183716109
PDWI01286900
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
750
826
+
Pro
TGG
[ENA]
¢þ
>WENV183717549
PDWJ01001108
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
39676
39752
+
Pro
TGG
[ENA]
¢þ
>WENV183718304
PDWJ01003304
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
20238
20314
+
Pro
TGG
[ENA]
¢þ
>WENV183718478
PDWJ01004333
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
347
271
-
Pro
TGG
[ENA]
¢þ
>WENV183718736
PDWJ01006251
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9178
9254
+
Pro
TGG
[ENA]
¢þ
>WENV183718884
PDWJ01007430
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4
80
+
Pro
TGG
[ENA]
¢þ
>WENV183719112
PDWJ01009838
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6607
6683
+
Pro
TGG
[ENA]
¢þ
>WENV183719122
PDWJ01009919
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
320
244
-
Pro
TGG
[ENA]
¢þ
>WENV183719534
PDWJ01015767
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
348
272
-
Pro
TGG
[ENA]
¢þ
>WENV183719750
PDWJ01019758
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2711
2635
-
Pro
TGG
[ENA]
¢þ
>WENV183720029
PDWJ01025128
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2966
2890
-
Pro
TGG
[ENA]
¢þ
>WENV183720678
PDWJ01041383
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
627
551
-
Pro
TGG
[ENA]
¢þ
>WENV183721332
PDWJ01064899
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1461
1537
+
Pro
TGG
[ENA]
¢þ
>WENV183722265
PDWJ01115883
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1006
930
-
Pro
TGG
[ENA]
¢þ
>WENV170635219
JDSF01000315
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
464
540
+
Pro
TGG
[ENA]
¢þ
>WENV170635236
JDSF01000374
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
5798
5874
+
Pro
TGG
[ENA]
¢þ
>WENV170635443
JDSF01022895
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
18
94
+
Pro
TGG
[ENA]
¢þ
>WENV170697564
LGVF01154848
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1026
1102
+
Pro
TGG
[ENA]
¢þ
>W141557813
JHVL01000004
Bacillota
Clostridiisalibacter paucivorans DSM 22131 [JHVL]
139036
138960
-
Pro
TGG
[ENA]
¡û
>W141557816
JHVL01000004
Bacillota
Clostridiisalibacter paucivorans DSM 22131 [JHVL]
138041
137965
-
Pro
TGG
[ENA]
¡û
>W1910665359
MCHZ01000009
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
2083
2159
+
Pro
TGG
[ENA]
¡û
>W1910665373
MCHZ01000011
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
398
322
-
Pro
TGG
[ENA]
¡û
>W1910665387
MCHZ01000013
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
18514
18590
+
Pro
TGG
[ENA]
¡û
>W1910665393
MCHZ01000029
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
140329
140253
-
Pro
TGG
[ENA]
¡û
>W1910665405
MCHZ01000030
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
954
1030
+
Pro
TGG
[ENA]
¡û
>W1510725308
CXYX01000008
Bacillota
Inediibacterium massiliense mt12 [CXYX]
219
143
-
Pro
TGG
[ENA]
¡û
>W1510725356
CXYX01000013
Bacillota
Inediibacterium massiliense mt12 [CXYX]
678537
678613
+
Pro
TGG
[ENA]
¡û
>W1510725372
CXYX01000015
Bacillota
Inediibacterium massiliense mt12 [CXYX]
1097
1173
+
Pro
TGG
[ENA]
¡û
>W1510725400
CXYX01000015
Bacillota
Inediibacterium massiliense mt12 [CXYX]
1635181
1635105
-
Pro
TGG
[ENA]
¡û
>W1610788699
LOHE01000042
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
7009
7085
+
Pro
TGG
[ENA]
¡û
>W1610788723
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
20596
20520
-
Pro
TGG
[ENA]
¡û
>W1610788727
LOHE01000044
Bacillota
Abyssisolibacter fermentans MCWD3 [LOHE]
20199
20123
-
Pro
TGG
[ENA]
¡û
>W1710589037
FQZV01000004
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
46417
46493
+
Pro
TGG
[ENA]
¡û
>W1710589059
FQZV01000020
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
69452
69376
-
Pro
TGG
[ENA]
¡û
>W1710589531
FRAG01000019
Bacillota
Paramaledivibacter caminithermalis DSM 15212 [FRAG]
54105
54181
+
Pro
TGG
[ENA]
¡û
>W1710589558
FRAG01000123
Bacillota
Paramaledivibacter caminithermalis DSM 15212 [FRAG]
540
616
+
Pro
TGG
[ENA]
¡û
>W1710589679
FRAJ01000007
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
8784
8860
+
Pro
TGG
[ENA]
¡û
>W1710589689
FRAJ01000008
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
136042
135966
-
Pro
TGG
[ENA]
¡û
>W1710589706
FRAJ01000024
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
27331
27255
-
Pro
TGG
[ENA]
¡û
>W1710604198
FUZT01000025
Bacillota
Maledivibacter halophilus [FUZT]
691
767
+
Pro
TGG
[ENA]
¡û
>W1710604204
FUZT01000029
Bacillota
Maledivibacter halophilus [FUZT]
4895
4819
-
Pro
TGG
[ENA]
¡û
>W1710604210
FUZT01000029
Bacillota
Maledivibacter halophilus [FUZT]
4230
4154
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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