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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228397 (28 seq.)
>W1711068932
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
197075
197002
-
Pro
CGG
[ENA]
¡û
>C171034088
CP014912
Bacillota
Secundilactobacillus paracollinoides TMW 1.1979 [CP014912]
2070105
2070180
+
Pro
CGG
-
¡û
>C171034219
CP014924
Bacillota
Secundilactobacillus paracollinoides TMW 1.1995 [CP014924]
2240543
2240618
+
Pro
CGG
-
¡û
>C171119455
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
421737
421810
+
Pro
CGG
-
¡û
>C171126473
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
414736
414809
+
Pro
CGG
-
¡û
>C017443
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1409340
1409267
-
Pro
CGG
[Ensembl]
¡û
>WENV180333963
OBLF01003315
[OBLF] metagenome; feces
238
311
+
Pro
CGG
[ENA]
¢þ
>WENV180349127
OBLO01023618
[OBLO] metagenome; feces
1827
1754
-
Pro
CGG
[ENA]
¢þ
>W141241956
CAHU01000004
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
89342
89415
+
Pro
CGG
[ENA]
¡û
>WENV170659120
JXWR01000185
[JXWR] soil metagenome; rice field; ambient CO2
20010
20083
+
Pro
CGG
[ENA]
¢þ
>C191023254
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1335048
1334975
-
Pro
CGG
-
¡û
>W09101457
AAEV01000001
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
194282
194209
-
Pro
CGG
[ENA]
¡û
>C141009512
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1375182
1375109
-
Pro
CGG
[Ensembl]
¡û
>W1911631294
PUFB01000016
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
93223
93296
+
Pro
CGG
[ENA]
¡û
>W1810000840
BEWQ01000005
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
55390
55463
+
Pro
CGG
[ENA]
¡û
>C161092322
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
662833
662906
+
Pro
CGG
[Ensembl]
¡û
>W1610036226
AZFD01000158
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [AZFD]
3516
3591
+
Pro
CGG
[ENA]
¡û
>W1610044051
BBAG01000009
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
69756
69681
-
Pro
CGG
[ENA]
¡û
>W1610049048
BBEQ01000029
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [BBEQ]
35900
35825
-
Pro
CGG
[ENA]
¡û
>W1610528413
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
93098
93171
+
Pro
CGG
[ENA]
¡û
>W1610550890
JYDC01000019
Bacillota
Secundilactobacillus collinoides [JYDC]
22828
22903
+
Pro
CGG
[ENA]
¡û
>W1610650110
LJIU01000008
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
59135
59062
-
Pro
CGG
[ENA]
¡û
>W1610909502
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
197075
197002
-
Pro
CGG
[ENA]
¡û
>W1710033265
AZFD01000158
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [AZFD]
3516
3591
+
Pro
CGG
[ENA]
¡û
>W1710041211
BBAG01000009
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
69756
69681
-
Pro
CGG
[ENA]
¡û
>W1710045520
BBEQ01000029
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [BBEQ]
35900
35825
-
Pro
CGG
[ENA]
¡û
>W1710630003
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
93098
93171
+
Pro
CGG
[ENA]
¡û
>W1710661163
JYDC01000019
Bacillota
Secundilactobacillus collinoides [JYDC]
22828
22903
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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