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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228403 (139 seq.)
>W1710855617
LLYY01000001
Bacillota
Shouchella shacheensis [LLYY]
45482
45408
-
Met
CAT
[ENA]
¡û
>W131086782
AOBY01000001
Bacillota
Streptococcus mutans KK21 [AOBY]
27659
27734
+
Met
CAT
[ENA]
¡û
>W131086840
AOBZ01000002
Bacillota
Streptococcus mutans KK23 [AOBZ]
472
547
+
Met
CAT
[ENA]
¡û
>W131086870
AOCA01000001
Bacillota
Streptococcus mutans AC4446 [AOCA]
6112
6187
+
Met
CAT
[ENA]
¡û
>W1711090139
LTAK01000019
Bacillota
Streptococcus mutans [LTAK]
159408
159333
-
Met
CAT
[ENA]
¡û
>W131165980
ARCA01000046
Bacillota
Streptococcus caballi DSM 19004 [ARCA]
201
276
+
Met
CAT
[ENA]
¡û
>W131166021
ARCB01000011
Bacillota
Streptococcus didelphis DSM 15616 [ARCB]
58557
58482
-
Met
CAT
[ENA]
¡û
>W1711944798
NBFA01000034
Bacillota
Streptococcus mutans [NBFA]
164
89
-
Met
CAT
[ENA]
¡û
>W1711944879
NBFC01000049
Bacillota
Streptococcus mutans [NBFC]
179
254
+
Met
CAT
[ENA]
¡û
>W1711945010
NBFG01000044
Bacillota
Streptococcus mutans [NBFG]
159
234
+
Met
CAT
[ENA]
¡û
>W1711945049
NBFH01000046
Bacillota
Streptococcus mutans [NBFH]
179
254
+
Met
CAT
[ENA]
¡û
>W1711945062
NBFI01000004
Bacillota
Streptococcus mutans [NBFI]
70896
70821
-
Met
CAT
[ENA]
¡û
>W1711945157
NBFK01000042
Bacillota
Streptococcus mutans [NBFK]
164
89
-
Met
CAT
[ENA]
¡û
>W1711956511
NBTK01000001
Bacillota
Streptococcus mutans [NBTK]
167993
168068
+
Met
CAT
[ENA]
¡û
>W1712049644
NFUJ01000011
Bacillota
Streptococcus mutans [NFUJ]
15180
15105
-
Met
CAT
[ENA]
¡û
>C022855
AE014133
Bacillota
Streptococcus mutans UA159 [AE014133]
22954
23027
+
Met
CAT
[Ensembl]
¡û
>W141010140
AHRC01000132
Bacillota
Streptococcus mutans S1B [AHRC]
128
203
+
Met
CAT
[ENA]
¡û
>W141010196
AHRE01000102
Bacillota
Streptococcus mutans SA41 [AHRE]
128
203
+
Met
CAT
[ENA]
¡û
>W141010215
AHRF01000068
Bacillota
Streptococcus mutans SF12 [AHRF]
119
44
-
Met
CAT
[ENA]
¡û
>W141010247
AHRG01000081
Bacillota
Streptococcus mutans R221 [AHRG]
128
203
+
Met
CAT
[ENA]
¡û
>W141010275
AHRH01000119
Bacillota
Streptococcus mutans M230 [AHRH]
128
203
+
Met
CAT
[ENA]
¡û
>W141010310
AHRI01000115
Bacillota
Streptococcus mutans OMZ175 [AHRI]
126
201
+
Met
CAT
[ENA]
¡û
>W141010387
AHRL01000065
Bacillota
Streptococcus mutans 4SM1 [AHRL]
119
44
-
Met
CAT
[ENA]
¡û
>W141010420
AHRM01000106
Bacillota
Streptococcus mutans 3SN1 [AHRM]
119
44
-
Met
CAT
[ENA]
¡û
>W141010508
AHRP01000086
Bacillota
Streptococcus mutans 11SSST2 [AHRP]
119
44
-
Met
CAT
[ENA]
¡û
>W141010538
AHRQ01000119
Bacillota
Streptococcus mutans 4VF1 [AHRQ]
119
44
-
Met
CAT
[ENA]
¡û
>W141010592
AHRS01000088
Bacillota
Streptococcus mutans 2VS1 [AHRS]
126
201
+
Met
CAT
[ENA]
¡û
>W141010684
AHRV01000110
Bacillota
Streptococcus mutans NFSM2 [AHRV]
119
44
-
Met
CAT
[ENA]
¡û
>W141010703
AHRW01000093
Bacillota
Streptococcus mutans NVAB [AHRW]
128
203
+
Met
CAT
[ENA]
¡û
>W141010740
AHRX01000098
Bacillota
Streptococcus mutans A9 [AHRX]
119
44
-
Met
CAT
[ENA]
¡û
>W141010792
AHRZ01000092
Bacillota
Streptococcus mutans NMT4863 [AHRZ]
119
44
-
Met
CAT
[ENA]
¡û
>W141010818
AHSA01000080
Bacillota
Streptococcus mutans A19 [AHSA]
119
44
-
Met
CAT
[ENA]
¡û
>W141010874
AHSC01000095
Bacillota
Streptococcus mutans G123 [AHSC]
128
203
+
Met
CAT
[ENA]
¡û
>W141010901
AHSD01000087
Bacillota
Streptococcus mutans M21 [AHSD]
128
203
+
Met
CAT
[ENA]
¡û
>W141010930
AHSE01000090
Bacillota
Streptococcus mutans T4 [AHSE]
128
203
+
Met
CAT
[ENA]
¡û
>W141011039
AHSI01000069
Bacillota
Streptococcus mutans NLML5 [AHSI]
126
201
+
Met
CAT
[ENA]
¡û
>W141011102
AHSK01000106
Bacillota
Streptococcus mutans M2A [AHSK]
119
44
-
Met
CAT
[ENA]
¡û
>W141011120
AHSL01000089
Bacillota
Streptococcus mutans N3209 [AHSL]
119
44
-
Met
CAT
[ENA]
¡û
>W141011157
AHSM01000107
Bacillota
Streptococcus mutans N66 [AHSM]
119
44
-
Met
CAT
[ENA]
¡û
>W141011215
AHSO01000104
Bacillota
Streptococcus mutans W6 [AHSO]
119
44
-
Met
CAT
[ENA]
¡û
>W141011238
AHSP01000133
Bacillota
Streptococcus mutans SF1 [AHSP]
119
44
-
Met
CAT
[ENA]
¡û
>W141011297
AHSR01000084
Bacillota
Streptococcus mutans SM6 [AHSR]
119
44
-
Met
CAT
[ENA]
¡û
>W141011355
AHST01000117
Bacillota
Streptococcus mutans ST6 [AHST]
128
203
+
Met
CAT
[ENA]
¡û
>W141011466
AHSX01000082
Bacillota
Streptococcus mutans 1ID3 [AHSX]
117
42
-
Met
CAT
[ENA]
¡û
>W141011525
AHSZ01000115
Bacillota
Streptococcus mutans 21 [AHSZ]
128
203
+
Met
CAT
[ENA]
¡û
>W141011576
AHTB01000093
Bacillota
Streptococcus mutans B [AHTB]
128
203
+
Met
CAT
[ENA]
¡û
>W141011629
AHTD01000086
Bacillota
Streptococcus mutans SM1 [AHTD]
137
62
-
Met
CAT
[ENA]
¡û
>WENV180233554
OBCP01001166
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
351
276
-
Ile2
CAT
[ENA]
¢þ
>WENV180334850
OBLF01069755
[OBLF] metagenome; feces
510
586
+
Ile2
CAT
[ENA]
¢þ
>WENV180349089
OBLO01022463
[OBLO] metagenome; feces
1793
1717
-
Ile
GAT
[ENA]
¢þ
>W141039985
ALYO01000028
Bacillota
Streptococcus mutans B05Sm11 [ALYO]
6093
6168
+
Met
CAT
[ENA]
¡û
>W141040047
ALYP01000033
Bacillota
Streptococcus mutans B13Sm1 [ALYP]
133
58
-
Met
CAT
[ENA]
¡û
>W141040213
ALYS01000049
Bacillota
Streptococcus mutans B107SM-B [ALYS]
1253
1328
+
Met
CAT
[ENA]
¡û
>W141040247
ALYT01000015
Bacillota
Streptococcus mutans B07Sm2 [ALYT]
6107
6182
+
Met
CAT
[ENA]
¡û
>W141040283
ALYU01000029
Bacillota
Streptococcus mutans B09Sm1 [ALYU]
122
197
+
Met
CAT
[ENA]
¡û
>W141040390
ALYW01000038
Bacillota
Streptococcus mutans B102SM-B [ALYW]
124
199
+
Met
CAT
[ENA]
¡û
>W141040500
ALYY01000022
Bacillota
Streptococcus mutans B04Sm5 [ALYY]
6205
6280
+
Met
CAT
[ENA]
¡û
>W141040768
ALZC01000073
Bacillota
Streptococcus mutans B88SM-A [ALZC]
6095
6170
+
Met
CAT
[ENA]
¡û
>W141040993
ALZG01000039
Bacillota
Streptococcus mutans B114SM-A [ALZG]
6206
6281
+
Met
CAT
[ENA]
¡û
>W141041014
ALZH01000026
Bacillota
Streptococcus mutans B115SM-A [ALZH]
550
625
+
Met
CAT
[ENA]
¡û
>WENV180495290
OCAA01038029
[OCAA] human gut metagenome; faeces
7
82
+
Ile2
CAT
[ENA]
¢þ
>WENV180571487
OCLT01000134
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
149975
149900
-
Ile2
CAT
[ENA]
¢þ
>WENV180574197
OCLW01001785
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
344
269
-
Ile2
CAT
[ENA]
¢þ
>WENV180639770
OCRL01000125
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
162533
162458
-
Ile2
CAT
[ENA]
¢þ
>WENV180641212
OCRM01001068
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
153
228
+
Ile2
CAT
[ENA]
¢þ
>WENV180935230
ODTS01131018
[ODTS] human metagenome; G_DNA_Subgingival plaque
143
68
-
Ile2
CAT
[ENA]
¢þ
>W141165505
AXSW01000001
Bacillota
Streptococcus mutans PKUSS-HG01 [AXSW]
173
248
+
Met
CAT
[ENA]
¡û
>W141165546
AXSX01000001
Bacillota
Streptococcus mutans PKUSS-LG01 [AXSX]
153
228
+
Met
CAT
[ENA]
¡û
>WENV182467684
OIOV01018527
[OIOV] human gut metagenome; human gut
235
310
+
Ile2
CAT
[ENA]
¢þ
>WENV183510154
OMHM01000363
[OMHM] human oral metagenome; human oral
2220
2295
+
Ile2
CAT
[ENA]
¢þ
>WENV183655347
OQWD01014609
[OQWD] human gut metagenome; human gut
266
191
-
Ile2
CAT
[ENA]
¢þ
>C181000177
AP014612
Bacillota
Streptococcus troglodytae TKU 31 [AP014612]
23565
23640
+
Met
CAT
-
¡û
>C181082113
CP023477
Bacillota
Streptococcus mutans LAR01 [CP023477]
22960
23035
+
Met
CAT
-
¡û
>C191079252
CP031733
Bacillota
Streptococcus chenjunshii Z15 [CP031733]
24040
24113
+
Met
CAT
-
¡û
>C191103188
CP033199
Bacillota
Streptococcus mutans LAB761 [CP033199]
1774532
1774607
+
Met
CAT
-
¡û
>C191206398
LR134320
Bacillota
Streptococcus mutans NCTC10832 [LR134320]
357424
357349
-
Met
CAT
-
¡û
>W1910930191
NISN01000003
Bacillota
Bacillus sp. FJAT-45037 [NISN]
351471
351547
+
Met
CAT
[ENA]
¡û
>C151004529
CP003686
Bacillota
Streptococcus mutans GS-5 [CP003686]
22968
23043
+
Met
CAT
[Ensembl]
¡û
>W1511452781
JVEO01000009
Bacillota
Streptococcus mutans 503_SMUT [JVEO]
483
558
+
Met
CAT
[ENA]
¡û
>W11149661
AEUW01000010
Bacillota
Streptococcus macacae NCTC 11558 [AEUW]
30437
30362
-
Met
CAT
[ENA]
¡û
>W1511682016
LFJO01000005
Bacillota
Alkalihalobacillus pseudalcaliphilus DSM 8725 [LFJO]
662250
662326
+
Met
CAT
[ENA]
¡û
>W11181518
AGKF01000002
Bacillota
Streptococcus mutans TCI-101 [AGKF]
231
306
+
Met
CAT
[ENA]
¡û
>W11181552
AGKG01000002
Bacillota
Streptococcus mutans TCI-109 [AGKG]
284
359
+
Met
CAT
[ENA]
¡û
>W11181588
AGKH01000002
Bacillota
Streptococcus mutans TCI-11 [AGKH]
185
260
+
Met
CAT
[ENA]
¡û
>W11181696
AGKK01000002
Bacillota
Streptococcus mutans TCI-120 [AGKK]
184
259
+
Met
CAT
[ENA]
¡û
>W11181730
AGKL01000002
Bacillota
Streptococcus mutans TCI-123 [AGKL]
183
258
+
Met
CAT
[ENA]
¡û
>W11181765
AGKM01000002
Bacillota
Streptococcus mutans TCI-125 [AGKM]
184
259
+
Met
CAT
[ENA]
¡û
>W11181802
AGKN01000002
Bacillota
Streptococcus mutans TCI-138 [AGKN]
188
263
+
Met
CAT
[ENA]
¡û
>W11181872
AGKP01000002
Bacillota
Streptococcus mutans TCI-145 [AGKP]
193
268
+
Met
CAT
[ENA]
¡û
>W11181909
AGKQ01000002
Bacillota
Streptococcus mutans TCI-148 [AGKQ]
218
293
+
Met
CAT
[ENA]
¡û
>W11181978
AGKS01000002
Bacillota
Streptococcus mutans TCI-151 [AGKS]
193
268
+
Met
CAT
[ENA]
¡û
>W11182015
AGKT01000002
Bacillota
Streptococcus mutans TCI-152 [AGKT]
193
268
+
Met
CAT
[ENA]
¡û
>W11182052
AGKU01000002
Bacillota
Streptococcus mutans TCI-153 [AGKU]
281
356
+
Met
CAT
[ENA]
¡û
>W11182123
AGKW01000002
Bacillota
Streptococcus mutans TCI-162 [AGKW]
187
262
+
Met
CAT
[ENA]
¡û
>W11182195
AGKY01000002
Bacillota
Streptococcus mutans TCI-164 [AGKY]
184
259
+
Met
CAT
[ENA]
¡û
>W11182233
AGKZ01000002
Bacillota
Streptococcus mutans TCI-169 [AGKZ]
353
428
+
Met
CAT
[ENA]
¡û
>W11182307
AGLB01000002
Bacillota
Streptococcus mutans TCI-173 [AGLB]
283
358
+
Met
CAT
[ENA]
¡û
>W11182344
AGLC01000002
Bacillota
Streptococcus mutans TCI-176 [AGLC]
236
311
+
Met
CAT
[ENA]
¡û
>W11182417
AGLE01000002
Bacillota
Streptococcus mutans TCI-179 [AGLE]
193
268
+
Met
CAT
[ENA]
¡û
>W11182487
AGLG01000002
Bacillota
Streptococcus mutans TCI-191 [AGLG]
190
265
+
Met
CAT
[ENA]
¡û
>W11182523
AGLH01000002
Bacillota
Streptococcus mutans TCI-196 [AGLH]
174
249
+
Met
CAT
[ENA]
¡û
>W11182558
AGLI01000002
Bacillota
Streptococcus mutans TCI-201 [AGLI]
281
356
+
Met
CAT
[ENA]
¡û
>W11182595
AGLJ01000002
Bacillota
Streptococcus mutans TCI-202 [AGLJ]
235
310
+
Met
CAT
[ENA]
¡û
>W11182668
AGLL01000002
Bacillota
Streptococcus mutans TCI-210 [AGLL]
193
268
+
Met
CAT
[ENA]
¡û
>W11182705
AGLM01000002
Bacillota
Streptococcus mutans TCI-212 [AGLM]
201
276
+
Met
CAT
[ENA]
¡û
>W11182742
AGLN01000003
Bacillota
Streptococcus mutans TCI-218 [AGLN]
281
356
+
Met
CAT
[ENA]
¡û
>W11182778
AGLO01000002
Bacillota
Streptococcus mutans TCI-219 [AGLO]
281
356
+
Met
CAT
[ENA]
¡û
>W11182849
AGLQ01000002
Bacillota
Streptococcus mutans TCI-222 [AGLQ]
195
270
+
Met
CAT
[ENA]
¡û
>W11182886
AGLR01000002
Bacillota
Streptococcus mutans TCI-223 [AGLR]
193
268
+
Met
CAT
[ENA]
¡û
>W11182921
AGLS01000002
Bacillota
Streptococcus mutans TCI-224 [AGLS]
184
259
+
Met
CAT
[ENA]
¡û
>W11182958
AGLT01000002
Bacillota
Streptococcus mutans TCI-227 [AGLT]
233
308
+
Met
CAT
[ENA]
¡û
>W11183031
AGLV01000002
Bacillota
Streptococcus mutans TCI-234 [AGLV]
229
304
+
Met
CAT
[ENA]
¡û
>W11183068
AGLW01000002
Bacillota
Streptococcus mutans TCI-239 [AGLW]
193
268
+
Met
CAT
[ENA]
¡û
>W11183105
AGLX01000002
Bacillota
Streptococcus mutans TCI-242 [AGLX]
281
356
+
Met
CAT
[ENA]
¡û
>W11183143
AGLY01000002
Bacillota
Streptococcus mutans TCI-243 [AGLY]
281
356
+
Met
CAT
[ENA]
¡û
>W11183218
AGMA01000002
Bacillota
Streptococcus mutans TCI-249 [AGMA]
184
259
+
Met
CAT
[ENA]
¡û
>W11183293
AGMC01000002
Bacillota
Streptococcus mutans TCI-260 [AGMC]
193
268
+
Met
CAT
[ENA]
¡û
>W11183329
AGMD01000002
Bacillota
Streptococcus mutans TCI-264 [AGMD]
188
263
+
Met
CAT
[ENA]
¡û
>W11183366
AGME01000002
Bacillota
Streptococcus mutans TCI-267 [AGME]
190
265
+
Met
CAT
[ENA]
¡û
>W11183403
AGMF01000002
Bacillota
Streptococcus mutans TCI-268 [AGMF]
190
265
+
Met
CAT
[ENA]
¡û
>W11183543
AGMJ01000002
Bacillota
Streptococcus mutans TCI-289 [AGMJ]
190
265
+
Met
CAT
[ENA]
¡û
>W11183579
AGMK01000002
Bacillota
Streptococcus mutans TCI-292 [AGMK]
184
259
+
Met
CAT
[ENA]
¡û
>W11183615
AGML01000002
Bacillota
Streptococcus mutans TCI-294 [AGML]
193
268
+
Met
CAT
[ENA]
¡û
>W11183652
AGMM01000002
Bacillota
Streptococcus mutans TCI-298 [AGMM]
184
259
+
Met
CAT
[ENA]
¡û
>W11183723
AGMO01000002
Bacillota
Streptococcus mutans TCI-399 [AGMO]
281
356
+
Met
CAT
[ENA]
¡û
>W11183794
AGMQ01000002
Bacillota
Streptococcus mutans TCI-51 [AGMQ]
253
328
+
Met
CAT
[ENA]
¡û
>W11183866
AGMS01000002
Bacillota
Streptococcus mutans TCI-70 [AGMS]
197
272
+
Met
CAT
[ENA]
¡û
>W11183900
AGMT01000002
Bacillota
Streptococcus mutans TCI-75 [AGMT]
193
268
+
Met
CAT
[ENA]
¡û
>W11183938
AGMU01000002
Bacillota
Streptococcus mutans TCI-78 [AGMU]
190
265
+
Met
CAT
[ENA]
¡û
>W11183975
AGMV01000002
Bacillota
Streptococcus mutans TCI-82 [AGMV]
281
356
+
Met
CAT
[ENA]
¡û
>W11184048
AGMX01000002
Bacillota
Streptococcus mutans TCI-86 [AGMX]
247
322
+
Met
CAT
[ENA]
¡û
>W11184119
AGMZ01000002
Bacillota
Streptococcus mutans TCI-96 [AGMZ]
281
356
+
Met
CAT
[ENA]
¡û
>C121001142
AP012336
Bacillota
Streptococcus mutans LJ23 [AP012336]
22971
23046
+
Met
CAT
-
¡û
>C161053856
CP013237
Bacillota
Streptococcus mutans NG8 [CP013237]
1568013
1567938
-
Met
CAT
-
¡û
>C161076209
CP014699
Bacillota
Streptococcus pantholopis TA 26 [CP014699]
2112385
2112458
+
Met
CAT
[Ensembl]
¡û
>W1610717998
LLYY01000001
Bacillota
Shouchella shacheensis [LLYY]
45482
45408
-
Met
CAT
[ENA]
¡û
>W1610924483
LTAK01000019
Bacillota
Streptococcus mutans [LTAK]
159408
159333
-
Met
CAT
[ENA]
¡û
>W1710087127
BDOS01000001
Bacillota
Streptococcus mutans [BDOS]
19619
19694
+
Met
CAT
[ENA]
¡û
>W1710731706
LGAC01000001
Bacillota
Streptococcus mutans [LGAC]
144
219
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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