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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228499 (49 seq.)
>W1711067083
LSDM01000060
Bacteroidota
Prevotella sp. DNF00663 [LSDM]
20460
20385
-
His
GTG
[ENA]
¡û
>W131232628
AUJK01000001
Bacteroidota
Prevotella sp. AGR2160 [AUJK]
147817
147893
+
His
GTG
[ENA]
¡û
>W131237985
AUTZ01000002
Bacteroidota
Prevotella intermedia ATCC 25611 = DSM 20706 [AUTZ]
90832
90757
-
His
GTG
[ENA]
¡û
>WENV180005904
FLRX01027253
[FLRX] metagenome; saliva
475
401
-
His
GTG
[ENA]
¢þ
>WENV180118483
OASD01000008
[OASD] human gut metagenome; ENVO:feces
103422
103347
-
His
GTG
[ENA]
¢þ
>WENV180118570
OASD01000067
[OASD] human gut metagenome; ENVO:feces
44314
44239
-
His
GTG
[ENA]
¢þ
>WENV180596975
OCPK01000096
[OCPK] human gut metagenome; ENVO:feces
7896
7821
-
His
GTG
[ENA]
¢þ
>WENV180597118
OCPK01003229
[OCPK] human gut metagenome; ENVO:feces
1210
1285
+
His
GTG
[ENA]
¢þ
>WENV180718104
ODGF01000021
[ODGF] human metagenome; G_DNA_Throat
15828
15754
-
His
GTG
[ENA]
¢þ
>WENV180751121
ODHS01021915
[ODHS] human metagenome; G_DNA_Supragingival plaque
350
424
+
His
GTG
[ENA]
¢þ
>WENV180763864
ODIA01007044
[ODIA] human metagenome; G_DNA_Tongue dorsum
77
2
-
His
GTG
[ENA]
¢þ
>WENV181013954
ODWN01006999
[ODWN] human metagenome; G_DNA_Tongue dorsum
3463
3538
+
His
GTG
[ENA]
¢þ
>WENV181019708
ODWU01010884
[ODWU] human metagenome; G_DNA_Supragingival plaque
2687
2612
-
His
GTG
[ENA]
¢þ
>WENV181019923
ODWU01025363
[ODWU] human metagenome; G_DNA_Supragingival plaque
3
78
+
His
GTG
[ENA]
¢þ
>WENV181020079
ODWU01050670
[ODWU] human metagenome; G_DNA_Supragingival plaque
728
653
-
His
GTG
[ENA]
¢þ
>WENV181078362
OEAS01000019
[OEAS] human metagenome; G_DNA_Supragingival plaque
45046
45120
+
His
GTG
[ENA]
¢þ
>WENV181762977
OGQX01001575
[OGQX] human gut metagenome; faeces
3543
3620
+
His
GTG
[ENA]
¢þ
>WENV181867476
OGWW01000206
[OGWW] human gut metagenome; faeces
37241
37167
-
His
GTG
[ENA]
¢þ
>WENV181926040
OGYM01022270
[OGYM] human gut metagenome; faeces
663
589
-
His
GTG
[ENA]
¢þ
>WENV181996627
OHAU01000181
[OHAU] human gut metagenome; faeces
11117
11043
-
His
GTG
[ENA]
¢þ
>WENV182005506
OHBE01006270
[OHBE] human gut metagenome; faeces
3296
3370
+
His
GTG
[ENA]
¢þ
>W141226271
BAJY01000003
Bacteroidota
Prevotella falsenii JCM 15124 [BAJY]
131940
131865
-
His
GTG
[ENA]
¡û
>W141277953
JAEZ01000002
Bacteroidota
Prevotella intermedia ATCC 25611 = DSM 20706 [JAEZ]
90832
90757
-
His
GTG
[ENA]
¡û
>WENV183115436
OLNQ01008929
[OLNQ] human gut metagenome; faeces
2469
2395
-
His
GTG
[ENA]
¢þ
>WENV183391444
OLZD01002592
[OLZD] human gut metagenome; feces
2928
3003
+
His
GTG
[ENA]
¢þ
>WENV183508816
OMHF01006739
[OMHF] human oral metagenome; human oral
558
633
+
His
GTG
[ENA]
¢þ
>C181103889
CP024696
Bacteroidota
Prevotella intermedia KCOM 2033 [CP024696]
2657310
2657384
+
His
GTG
-
¡û
>C181103959
CP024697
Bacteroidota
Prevotella intermedia KCOM 2836 [CP024697]
269269
269195
-
His
GTG
-
¡û
>C181104678
CP024723
Bacteroidota
Prevotella intermedia KCOM 2837 [CP024723, CP024724]
515332
515258
-
His
GTG
-
¡û
>C181104697
CP024725
Bacteroidota
Prevotella intermedia KCOM 2838 [CP024725, CP024726]
515560
515634
+
His
GTG
-
¡û
>C181104755
CP024727
Bacteroidota
Prevotella intermedia KCOM 1949 [CP024727, CP024728]
1776488
1776414
-
His
GTG
-
¡û
>C181104792
CP024729
Bacteroidota
Prevotella intermedia KCOM 1933 [CP024729, CP024730]
1746322
1746396
+
His
GTG
-
¡û
>C181104888
CP024732
Bacteroidota
Prevotella intermedia KCOM 1741 [CP024732, CP024733]
2152377
2152303
-
His
GTG
-
¡û
>C181104948
CP024734
Bacteroidota
Prevotella intermedia KCOM 1944 [CP024734, CP024735]
468457
468383
-
His
GTG
-
¡û
>C181187844
CP030094
Bacteroidota
Prevotella intermedia KCOM 2734 [CP030094, CP030095]
1981477
1981551
+
His
GTG
-
¡û
>W1911247939
NSLY01000014
Bacteroidota
Prevotella intermedia WW2834 [NSLY]
37753
37679
-
His
GTG
[ENA]
¡û
>W1911247972
NSLZ01000018
Bacteroidota
Prevotella intermedia WW855 [NSLZ]
17073
17147
+
His
GTG
[ENA]
¡û
>W1911248007
NSMA01000002
Bacteroidota
Prevotella intermedia WW414 [NSMA]
228926
228852
-
His
GTG
[ENA]
¡û
>W1911767259
QXEM01000006
Bacteroidota
Prevotella intermedia ATCC 15032 [QXEM]
77201
77275
+
His
GTG
[ENA]
¡û
>W1810078914
PEKN01000001
Bacteroidota
Prevotella intermedia KCOM 1653 [PEKN]
2067410
2067336
-
His
GTG
[ENA]
¡û
>W1810080025
PENE01000001
Bacteroidota
Prevotella intermedia KCOM 1945 [PENE]
706855
706929
+
His
GTG
[ENA]
¡û
>W1810080077
PENF01000001
Bacteroidota
Prevotella intermedia KCOM 2698 [PENF]
1945281
1945355
+
His
GTG
[ENA]
¡û
>W1810084787
PESN01000001
Bacteroidota
Prevotella intermedia KCOM 2069 [PESN]
326870
326944
+
His
GTG
[ENA]
¡û
>W1510000549
ATMK01000016
Bacteroidota
Prevotella intermedia ZT [ATMK]
27590
27515
-
His
GTG
[ENA]
¡û
>C121013887
CP003503
Bacteroidota
Prevotella intermedia 17 [CP003502, CP003503]
1349582
1349657
+
His
GTG
[Ensembl]
¡û
>C161002011
AP014925
Bacteroidota
Prevotella intermedia 17-2 [AP014925, AP014926]
1556437
1556362
-
His
GTG
-
¡û
>W1610583850
LBGT01000028
Bacteroidota
Prevotella intermedia [LBGT]
12057
12132
+
His
GTG
[ENA]
¡û
>W1610907653
LSDM01000060
Bacteroidota
Prevotella sp. DNF00663 [LSDM]
20460
20385
-
His
GTG
[ENA]
¡û
>W1710702998
LBGT01000028
Bacteroidota
Prevotella intermedia [LBGT]
12057
12132
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK