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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228614 (69 seq.)
>W1711115580
LUAH01000038
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
208192
208110
-
Leu
CAA
[ENA]
¡û
>W1711506308
MKWH01000032
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
15517
15599
+
Leu
CAA
[ENA]
¡û
>W1711712735
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
882274
882356
+
Leu
CAA
[ENA]
¡û
>W1711712746
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
1973146
1973064
-
Leu
CAA
[ENA]
¡û
>C171089502
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
3511658
3511740
+
Leu
CAA
-
¡û
>C171089537
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
4260599
4260517
-
Leu
CAA
-
¡û
>C171118438
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
3081354
3081436
+
Leu
CAA
-
¡û
>C171118485
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
3887846
3887764
-
Leu
CAA
-
¡û
>WENV183726902
PJTO01000463
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
269
189
-
Leu
CAA
[ENA]
¢þ
>WENV183726945
PJTO01000784
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
8152
8232
+
Leu
CAA
[ENA]
¢þ
>WENV183727779
PJTP01000219
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
269
189
-
Leu
CAA
[ENA]
¢þ
>WENV183727786
PJTP01000295
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
8152
8232
+
Leu
CAA
[ENA]
¢þ
>WENV183728837
PJTQ01000662
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
269
189
-
Leu
CAA
[ENA]
¢þ
>WENV183728935
PJTQ01001215
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
8152
8232
+
Leu
CAA
[ENA]
¢þ
>WENV183730545
PJTS01000119
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
38772
38852
+
Leu
CAA
[ENA]
¢þ
>WENV183730755
PJTS01000590
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
6509
6589
+
Leu
CAA
[ENA]
¢þ
>WENV183732304
PJTX01000003
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
43662
43582
-
Leu
CAA
[ENA]
¢þ
>WENV183732322
PJTX01000013
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
31194
31274
+
Leu
CAA
[ENA]
¢þ
>WENV183732935
PJTY01000003
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
480544
480624
+
Leu
CAA
[ENA]
¢þ
>WENV183732974
PJTY01000011
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
254333
254413
+
Leu
CAA
[ENA]
¢þ
>WENV183733963
PJTZ01000008
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
478531
478611
+
Leu
CAA
[ENA]
¢þ
>WENV183733977
PJTZ01000011
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
313245
313325
+
Leu
CAA
[ENA]
¢þ
>WENV183735048
PJUA01000594
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
269
189
-
Leu
CAA
[ENA]
¢þ
>WENV183735100
PJUA01000940
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
8152
8232
+
Leu
CAA
[ENA]
¢þ
>WENV183735269
PJUA01006572
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3
83
+
Leu
CAA
[ENA]
¢þ
>WENV183735328
PJUA01012086
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
10
90
+
Leu
CAA
[ENA]
¢þ
>WENV183735702
PJUB01000696
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
8152
8232
+
Leu
CAA
[ENA]
¢þ
>WENV183735741
PJUB01001077
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
1135
1215
+
Leu
CAA
[ENA]
¢þ
>WENV183735854
PJUB01005550
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
43
123
+
Leu
CAA
[ENA]
¢þ
>WENV183736006
PJUB01030217
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
43
123
+
Leu
CAA
[ENA]
¢þ
>WENV183736522
PJUC01008623
[PJUC] soil metagenome; Soil enriched on filter paper
1214
1134
-
Leu
CAA
[ENA]
¢þ
>WENV183736593
PJUC01018532
[PJUC] soil metagenome; Soil enriched on filter paper
547
627
+
Leu
CAA
[ENA]
¢þ
>WENV183736599
PJUC01019447
[PJUC] soil metagenome; Soil enriched on filter paper
35
115
+
Leu
CAA
[ENA]
¢þ
>WENV183736766
PJUD01000018
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
81915
81835
-
Leu
CAA
[ENA]
¢þ
>WENV183736771
PJUD01000020
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
238690
238770
+
Leu
CAA
[ENA]
¢þ
>WENV183736805
PJUD01000036
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
43662
43582
-
Leu
CAA
[ENA]
¢þ
>WENV183736850
PJUD01000057
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
30855
30775
-
Leu
CAA
[ENA]
¢þ
>WENV183738603
PJUE01000038
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
43662
43582
-
Leu
CAA
[ENA]
¢þ
>WENV183738643
PJUE01000057
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
30855
30775
-
Leu
CAA
[ENA]
¢þ
>WENV183738694
PJUE01000109
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
30822
30742
-
Leu
CAA
[ENA]
¢þ
>WENV183738840
PJUE01000284
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
13225
13145
-
Leu
CAA
[ENA]
¢þ
>WENV183740268
PJUF01000910
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3308
3388
+
Leu
CAA
[ENA]
¢þ
>WENV183740488
PJUF01002657
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4337
4257
-
Leu
CAA
[ENA]
¢þ
>WENV183740784
PJUF01009950
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
262
182
-
Leu
CAA
[ENA]
¢þ
>WENV183741273
PJUF01072982
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
385
305
-
Leu
CAA
[ENA]
¢þ
>WENV183741397
PJUG01000003
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
568346
568266
-
Leu
CAA
[ENA]
¢þ
>WENV183741474
PJUG01000022
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
57674
57594
-
Leu
CAA
[ENA]
¢þ
>WENV183741892
PJUH01000002
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
568346
568266
-
Leu
CAA
[ENA]
¢þ
>WENV183741957
PJUH01000017
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
57674
57594
-
Leu
CAA
[ENA]
¢þ
>WENV183742494
PJUI01000004
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
568346
568266
-
Leu
CAA
[ENA]
¢þ
>WENV183742633
PJUI01000036
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
57674
57594
-
Leu
CAA
[ENA]
¢þ
>WENV183742967
PJUJ01000002
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
421646
421726
+
Leu
CAA
[ENA]
¢þ
>WENV183743072
PJUJ01000021
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
57674
57594
-
Leu
CAA
[ENA]
¢þ
>WENV183743811
PJUK01000003
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
568346
568266
-
Leu
CAA
[ENA]
¢þ
>WENV183743882
PJUK01000022
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
57674
57594
-
Leu
CAA
[ENA]
¢þ
>WENV170001607
AGFS01105454
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
402
320
-
Leu
CAA
[ENA]
¢þ
>C191222320
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
5477276
5477196
-
Leu
CAA
-
¡û
>C191222322
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
5099385
5099305
-
Leu
CAA
-
¡û
>W141701938
JMLD01000001
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
196839
196757
-
Leu
CAA
[ENA]
¡û
>W141701972
JMLD01000014
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
170024
170104
+
Leu
CAA
[ENA]
¡û
>W1910664341
MCAQ01000001
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
770173
770253
+
Leu
CAA
[ENA]
¡û
>W1910664401
MCAQ01000028
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
39192
39112
-
Leu
CAA
[ENA]
¡û
>W1810002530
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
1456858
1456938
+
Leu
CAA
[ENA]
¡û
>W1810002545
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
2081475
2081395
-
Leu
CAA
[ENA]
¡û
>W1810531901
QCXX01000001
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
422947
422867
-
Leu
CAA
[ENA]
¡û
>W1810531914
QCXX01000003
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
638249
638329
+
Leu
CAA
[ENA]
¡û
>WENV11101679
AGFS01105454
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
402
320
-
Leu
CAA
[ENA]
¡û
>W1511590275
LBGU01000034
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
107914
107832
-
Leu
CAA
[ENA]
¡û
>W1511590283
LBGU01000041
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
260486
260568
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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