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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229235 (16 seq.)
>WENV183736817
PJUD01000044
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
137623
137543
-
Leu
CAA
[ENA]
¢þ
>WENV183738623
PJUE01000043
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
137623
137543
-
Leu
CAA
[ENA]
¢þ
>WENV183739870
PJUF01000036
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
137623
137543
-
Leu
CAA
[ENA]
¢þ
>C181063653
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
702801
702881
+
Leu
CAA
-
¡û
>C181063926
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
706925
707005
+
Leu
CAA
-
¡û
>C181063969
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
677411
677491
+
Leu
CAA
-
¡û
>C191093544
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
1062147
1062227
+
Leu
CAA
-
¡û
>C191213469
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
720553
720633
+
Leu
CAA
-
¡û
>W1910578009
JUIX01000015
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
4507
4427
-
Leu
CAA
[ENA]
¡û
>W1810101914
PGTV01000012
Bacteroidota
Capnocytophaga canimorsus DSM 19204 [PGTV]
4533
4613
+
Leu
CAA
[ENA]
¡û
>W1510076184
CDOE01000050
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
1977
2059
+
Leu
CAA
[ENA]
¡û
>W1510076378
CDOJ01000056
Bacteroidota
Capnocytophaga canimorsus Cc2 [CDOJ]
13166
13248
+
Leu
CAA
[ENA]
¡û
>W1510076419
CDOK01000137
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
9004
9086
+
Leu
CAA
[ENA]
¡û
>C11104987
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
1631655
1631737
+
Leu
CAA
[Ensembl]
¡û
>W1710540863
FNXE01000024
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
4268
4188
-
Leu
CAA
[ENA]
¡û
>W1710570761
FOVI01000042
Bacteroidota
Paenimyroides ummariense [FOVI]
1925
1845
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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