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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229522 (134 seq.)
>W1711174290
LWED01000006
Gammaproteobacteria
Shewanella baltica [LWED]
144
68
-
Arg
ACG
[ENA]
¡û
>W1711174296
LWED01000014
Gammaproteobacteria
Shewanella baltica [LWED]
117972
117896
-
Arg
ACG
[ENA]
¡û
>W1711174298
LWED01000014
Gammaproteobacteria
Shewanella baltica [LWED]
117655
117579
-
Arg
ACG
[ENA]
¡û
>W1711621614
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
882938
883014
+
Arg
ACG
[ENA]
¡û
>W1711621615
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
883049
883125
+
Arg
ACG
[ENA]
¡û
>W1711621616
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
883136
883212
+
Arg
ACG
[ENA]
¡û
>W1711621648
MPDG02000026
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
198
122
-
Arg
ACG
[ENA]
¡û
>W1711621652
MPDG02000034
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
179
255
+
Arg
ACG
[ENA]
¡û
>C022528
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1445382
1445458
+
Arg
ACG
[Ensembl]
¡û
>C022530
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1445647
1445723
+
Arg
ACG
[Ensembl]
¡û
>C022532
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1445887
1445963
+
Arg
ACG
[Ensembl]
¡û
>w024945
AAZC01000098
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
1351
1429
+
Arg
ACG
[ENA]
¡û
>w024943
AAZC01000098
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
1034
1112
+
Arg
ACG
[ENA]
¡û
>w024942
AAZC01000098
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
899
977
+
Arg
ACG
[ENA]
¡û
>w024941
AAZC01000098
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
774
852
+
Arg
ACG
[ENA]
¡û
>w024940
AAZC01000098
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
611
687
+
Arg
ACG
[ENA]
¡û
>w024939
AAZC01000098
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
499
577
+
Arg
ACG
[ENA]
¡û
>w022859
AAWY01000011
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
7251
7173
-
Arg
ACG
[ENA]
¡û
>w022857
AAWY01000011
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
7491
7413
-
Arg
ACG
[ENA]
¡û
>w022855
AAWY01000011
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
7756
7678
-
Arg
ACG
[ENA]
¡û
>w018680
AATK01000097
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
7001
6923
-
Arg
ACG
[ENA]
¡û
>w018678
AATK01000097
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
7317
7239
-
Arg
ACG
[ENA]
¡û
>w018677
AATK01000097
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
7454
7376
-
Arg
ACG
[ENA]
¡û
>w018676
AATK01000097
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
7579
7501
-
Arg
ACG
[ENA]
¡û
>w018675
AATK01000097
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
7742
7669
-
Arg
ACG
[ENA]
¡û
>w018674
AATK01000097
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
7854
7776
-
Arg
ACG
[ENA]
¡û
>WENV181324292
OFLD01010098
[OFLD] marine metagenome; sea ice
488
412
-
Arg
ACG
[ENA]
¢þ
>WENV181324293
OFLD01010098
[OFLD] marine metagenome; sea ice
351
275
-
Arg
ACG
[ENA]
¢þ
>C08008665
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3722473
3722400
-
Arg
ACG
[Ensembl]
¡û
>C08008666
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3722362
3722289
-
Arg
ACG
[Ensembl]
¡û
>C08008667
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3722198
3722125
-
Arg
ACG
[Ensembl]
¡û
>C08008668
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3722073
3722000
-
Arg
ACG
[Ensembl]
¡û
>C08008669
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3721938
3721865
-
Arg
ACG
[Ensembl]
¡û
>C08008671
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3721621
3721548
-
Arg
ACG
[Ensembl]
¡û
>W141223851
BAEO01000024
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
52371
52447
+
Arg
ACG
[ENA]
¡û
>W141223852
BAEO01000024
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
52512
52588
+
Arg
ACG
[ENA]
¡û
>W141224073
BAES01000084
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
225
149
-
Arg
ACG
[ENA]
¡û
>W141224074
BAES01000084
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
88
12
-
Arg
ACG
[ENA]
¡û
>W141227919
BALN01000028
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
9
85
+
Arg
ACG
[ENA]
¡û
>W141277722
JAEU01000016
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
22818
22742
-
Arg
ACG
[ENA]
¡û
>WENV183616730
OOEE01000016
[OOEE] marine metagenome; sea ice
10110
10034
-
Arg
ACG
[ENA]
¢þ
>WENV183617459
OOEG01000288
[OOEG] marine metagenome; sea ice
2329
2253
-
Arg
ACG
[ENA]
¢þ
>WENV183617460
OOEG01000288
[OOEG] marine metagenome; sea ice
2192
2116
-
Arg
ACG
[ENA]
¢þ
>WENV183622954
OOFW01061399
[OOFW] marine metagenome; sea ice
82
6
-
Arg
ACG
[ENA]
¢þ
>WENV183624706
OOGE01001506
[OOGE] marine metagenome; sea ice
1684
1608
-
Arg
ACG
[ENA]
¢þ
>WENV183628604
OOGO01003029
[OOGO] marine metagenome; sea ice
1554
1630
+
Arg
ACG
[ENA]
¢þ
>WENV183628605
OOGO01003029
[OOGO] marine metagenome; sea ice
1695
1771
+
Arg
ACG
[ENA]
¢þ
>WENV183628606
OOGO01003029
[OOGO] marine metagenome; sea ice
1832
1908
+
Arg
ACG
[ENA]
¢þ
>C181016853
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4160444
4160368
-
Arg
ACG
-
¡û
>C181016854
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4160333
4160257
-
Arg
ACG
-
¡û
>C181016855
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4160169
4160093
-
Arg
ACG
-
¡û
>C181016856
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4160044
4159968
-
Arg
ACG
-
¡û
>C181016857
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4159909
4159833
-
Arg
ACG
-
¡û
>C181016859
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4159592
4159516
-
Arg
ACG
-
¡û
>C181165417
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3883337
3883413
+
Arg
ACG
-
¡û
>C181165419
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3883602
3883678
+
Arg
ACG
-
¡û
>C181165421
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3883842
3883918
+
Arg
ACG
-
¡û
>C191206474
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3588820
3588744
-
Arg
ACG
-
¡û
>C191206475
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3588709
3588633
-
Arg
ACG
-
¡û
>C191206476
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3588545
3588469
-
Arg
ACG
-
¡û
>C191206477
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3588420
3588344
-
Arg
ACG
-
¡û
>C191206478
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3588285
3588209
-
Arg
ACG
-
¡û
>W09102872
AAIO01000021
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
427
503
+
Arg
ACG
[ENA]
¡û
>W09102873
AAIO01000021
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
538
614
+
Arg
ACG
[ENA]
¡û
>W09102874
AAIO01000021
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
702
778
+
Arg
ACG
[ENA]
¡û
>W09102875
AAIO01000021
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
827
903
+
Arg
ACG
[ENA]
¡û
>W09102878
AAIO01000021
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
1278
1354
+
Arg
ACG
[ENA]
¡û
>C09109151
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1480894
1480970
+
Arg
ACG
[Ensembl]
¡û
>C09109152
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1481005
1481081
+
Arg
ACG
[Ensembl]
¡û
>C09109153
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1481169
1481245
+
Arg
ACG
[Ensembl]
¡û
>C09109154
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1481294
1481370
+
Arg
ACG
[Ensembl]
¡û
>C09109155
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1481429
1481505
+
Arg
ACG
[Ensembl]
¡û
>C09109157
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1481746
1481822
+
Arg
ACG
[Ensembl]
¡û
>C09109797
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
1393240
1393316
+
Arg
ACG
[Ensembl]
¡û
>W1810157912
PJCF01000001
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
152281
152205
-
Arg
ACG
[ENA]
¡û
>W1810157913
PJCF01000001
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
152141
152065
-
Arg
ACG
[ENA]
¡û
>W1810786551
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
467430
467354
-
Arg
ACG
[ENA]
¡û
>W1810786552
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
467318
467242
-
Arg
ACG
[ENA]
¡û
>W1810786554
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
467077
467001
-
Arg
ACG
[ENA]
¡û
>W1810786555
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
466972
466896
-
Arg
ACG
[ENA]
¡û
>W1810786556
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
466870
466794
-
Arg
ACG
[ENA]
¡û
>W1810786558
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
466675
466599
-
Arg
ACG
[ENA]
¡û
>W10119033
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93577
93501
-
Arg
ACG
[ENA]
¡û
>W10119034
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93466
93390
-
Arg
ACG
[ENA]
¡û
>W10119035
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93302
93226
-
Arg
ACG
[ENA]
¡û
>W10119036
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93177
93101
-
Arg
ACG
[ENA]
¡û
>W10119037
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93040
92964
-
Arg
ACG
[ENA]
¡û
>W10119039
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
92724
92648
-
Arg
ACG
[ENA]
¡û
>W10126362
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469204
469280
+
Arg
ACG
[ENA]
¡û
>W10126363
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469315
469391
+
Arg
ACG
[ENA]
¡û
>W10126364
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469479
469555
+
Arg
ACG
[ENA]
¡û
>W10126365
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469604
469680
+
Arg
ACG
[ENA]
¡û
>W10126366
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469730
469806
+
Arg
ACG
[ENA]
¡û
>W10126368
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
470047
470123
+
Arg
ACG
[ENA]
¡û
>C11119384
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1485283
1485359
+
Arg
ACG
[Ensembl]
¡û
>C11119385
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1485394
1485470
+
Arg
ACG
[Ensembl]
¡û
>C11119386
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1485558
1485634
+
Arg
ACG
[Ensembl]
¡û
>C11119387
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1485683
1485759
+
Arg
ACG
[Ensembl]
¡û
>C11119388
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1485809
1485885
+
Arg
ACG
[Ensembl]
¡û
>C11119390
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1486126
1486202
+
Arg
ACG
[Ensembl]
¡û
>C11119624
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3791598
3791522
-
Arg
ACG
[Ensembl]
¡û
>C11119625
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3791487
3791411
-
Arg
ACG
[Ensembl]
¡û
>C11119626
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3791323
3791247
-
Arg
ACG
[Ensembl]
¡û
>C11119627
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3791198
3791122
-
Arg
ACG
[Ensembl]
¡û
>C11119628
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3791061
3790985
-
Arg
ACG
[Ensembl]
¡û
>C11119630
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3790745
3790669
-
Arg
ACG
[Ensembl]
¡û
>C11121561
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3251251
3251175
-
Arg
ACG
[Ensembl]
¡û
>C11121563
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3250986
3250910
-
Arg
ACG
[Ensembl]
¡û
>C11121565
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3250746
3250670
-
Arg
ACG
[Ensembl]
¡û
>W11125205
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93577
93501
-
Arg
ACG
[ENA]
¡û
>W11125206
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93466
93390
-
Arg
ACG
[ENA]
¡û
>W11125207
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93302
93226
-
Arg
ACG
[ENA]
¡û
>W11125208
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93177
93101
-
Arg
ACG
[ENA]
¡û
>W11125209
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
93040
92964
-
Arg
ACG
[ENA]
¡û
>W11125211
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
92724
92648
-
Arg
ACG
[ENA]
¡û
>W11133623
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469204
469280
+
Arg
ACG
[ENA]
¡û
>W11133624
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469315
469391
+
Arg
ACG
[ENA]
¡û
>W11133625
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469479
469555
+
Arg
ACG
[ENA]
¡û
>W11133626
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469604
469680
+
Arg
ACG
[ENA]
¡û
>W11133627
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
469730
469806
+
Arg
ACG
[ENA]
¡û
>W11133629
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
470047
470123
+
Arg
ACG
[ENA]
¡û
>W11178442
AGEX01000004
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
529721
529645
-
Arg
ACG
[ENA]
¡û
>W11178443
AGEX01000004
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
529587
529511
-
Arg
ACG
[ENA]
¡û
>W11178445
AGEX01000004
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
529270
529194
-
Arg
ACG
[ENA]
¡û
>W11178478
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
461
385
-
Arg
ACG
[ENA]
¡û
>W11178479
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
350
274
-
Arg
ACG
[ENA]
¡û
>W11178480
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
186
110
-
Arg
ACG
[ENA]
¡û
>W1610982603
LWED01000006
Gammaproteobacteria
Shewanella baltica [LWED]
144
68
-
Arg
ACG
[ENA]
¡û
>W1610982609
LWED01000014
Gammaproteobacteria
Shewanella baltica [LWED]
117972
117896
-
Arg
ACG
[ENA]
¡û
>W1610982611
LWED01000014
Gammaproteobacteria
Shewanella baltica [LWED]
117655
117579
-
Arg
ACG
[ENA]
¡û
>W1710597912
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
294077
294153
+
Arg
ACG
[ENA]
¡û
>W1710597913
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
294232
294308
+
Arg
ACG
[ENA]
¡û
>W1710597915
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
294547
294623
+
Arg
ACG
[ENA]
¡û
>W1710597916
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
294711
294787
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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