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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229632 (36 seq.)
>WENV170012769
ASRO01000363
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
226
150
-
Met
CAT
[ENA]
¢þ
>WENV170012848
ASRP01001108
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2872
2796
-
Met
CAT
[ENA]
¢þ
>WENV170012951
ASRQ01000180
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
12856
12780
-
Met
CAT
[ENA]
¢þ
>WENV170013064
ASRR01004281
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
520
444
-
Met
CAT
[ENA]
¢þ
>WENV170014451
AYRG01000360
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
5949
6025
+
Met
CAT
[ENA]
¢þ
>WENV170112371
CEGE01004021
[CEGE] microbial mat metagenome; grass silage
234
310
+
Met
CAT
[ENA]
¢þ
>WENV170646365
JQGR01000227
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
3206
3282
+
Met
CAT
[ENA]
¢þ
>WENV170646369
JQGR01000291
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
226
150
-
Met
CAT
[ENA]
¢þ
>WENV170646390
JQGR01000804
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
2601
2525
-
Met
CAT
[ENA]
¢þ
>C181197005
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1741260
1741184
-
Met
CAT
-
¡û
>C181197007
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1372006
1371930
-
Met
CAT
-
¡û
>C191084637
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
198192
198268
+
Met
CAT
-
¡û
>C191084670
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1739955
1739879
-
Met
CAT
-
¡û
>C191084672
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1363141
1363065
-
Met
CAT
-
¡û
>W1911413046
NWVW01000001
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
289893
289817
-
Met
CAT
[ENA]
¡û
>W1911413076
NWVW01000017
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
6337
6413
+
Met
CAT
[ENA]
¡û
>W1911413088
NWVW01000023
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
3205
3129
-
Met
CAT
[ENA]
¡û
>W1911413094
NWVX01000002
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
96703
96627
-
Met
CAT
[ENA]
¡û
>W1911413114
NWVX01000017
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
47895
47971
+
Met
CAT
[ENA]
¡û
>W1911413135
NWVX01000035
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
25794
25870
+
Met
CAT
[ENA]
¡û
>W1911419360
NXAO01000011
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
26001
25925
-
Met
CAT
[ENA]
¡û
>W1911419364
NXAO01000012
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
31213
31289
+
Met
CAT
[ENA]
¡û
>W1911419375
NXAO01000017
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
3139
3063
-
Met
CAT
[ENA]
¡û
>W1911426172
NXID01000004
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
6398
6322
-
Met
CAT
[ENA]
¡û
>W1911426272
NXIF01000028
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
154
78
-
Met
CAT
[ENA]
¡û
>W1911426278
NXIF01000032
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
154
78
-
Met
CAT
[ENA]
¡û
>W1911576262
PDJW01000068
Campylobacterota
Malaciobacter mytili T234 [PDJW]
5272
5196
-
Met
CAT
[ENA]
¡û
>W1911576347
PDJY01000031
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
10560
10484
-
Met
CAT
[ENA]
¡û
>W1911576372
PDJY01000037
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
25651
25727
+
Met
CAT
[ENA]
¡û
>W1911576385
PDJY01000061
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
6458
6382
-
Met
CAT
[ENA]
¡û
>W1810295887
PTIW01000001
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
258890
258814
-
Met
CAT
[ENA]
¡û
>W1810295905
PTIW01000011
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
42931
42855
-
Met
CAT
[ENA]
¡û
>W1810295930
PTIW01000037
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
3296
3220
-
Met
CAT
[ENA]
¡û
>W1710602842
FUYO01000023
Campylobacterota
Malaciobacter marinus [FUYO]
42238
42162
-
Met
CAT
[ENA]
¡û
>W1710602850
FUYO01000039
Campylobacterota
Malaciobacter marinus [FUYO]
14343
14267
-
Met
CAT
[ENA]
¡û
>W1710602856
FUYO01000040
Campylobacterota
Malaciobacter marinus [FUYO]
19397
19473
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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