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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229804 (36 seq.)
>C171101477
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
2858941
2859017
+
Asp
GTC
-
¡û
>W131166834
ARCT01000002
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
1363236
1363312
+
Asp
GTC
[ENA]
¡û
>WENV016036
AACY020453465
Marine microbial communities from Global Ocean Sampling (GOS)
1125
1047
-
Asp
GTC
[ENA]
>WENV180109420
OAPK01001832
[OAPK] marine metagenome; ENVO:00002042
62
138
+
Asp
GTC
[ENA]
¢þ
>WENV180358573
OBNQ01000014
[OBNQ] marine metagenome; ENVO 00002150
7266
7342
+
Asp
GTC
[ENA]
¢þ
>WENV180373957
OBOJ01051177
[OBOJ] marine metagenome; seawater
210
286
+
Asp
GTC
[ENA]
¢þ
>WENV180382454
OBOT01009508
[OBOT] marine metagenome; 0
662
738
+
Asp
GTC
[ENA]
¢þ
>WENV180586413
OCOM01076063
[OCOM] marine metagenome; seawater
173
97
-
Asp
GTC
[ENA]
¢þ
>WENV181221713
OFCW01002910
[OFCW] microbial mat metagenome; Microbial Mat
565
489
-
Asp
GTC
[ENA]
¢þ
>W141188902
AYNA01000084
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
5723
5799
+
Asp
GTC
[ENA]
¡û
>WENV183065211
OLII01059670
[OLII] seawater metagenome; Sea water
336
412
+
Asp
GTC
[ENA]
¢þ
>WENV183669250
ORJL010822064
[ORJL] groundwater metagenome; groundwater
580
504
-
Asp
GTC
[ENA]
¢þ
>WENV183675943
ORJL011571365
[ORJL] groundwater metagenome; groundwater
5170
5246
+
Asp
GTC
[ENA]
¢þ
>WENV183749265
PPFU01144515
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1316
1392
+
Asp
GTC
[ENA]
¢þ
>WENV170004111
AGTN01563449
[AGTN] bioreactor metagenome; poplar biomass
213
137
-
Asp
GTC
[ENA]
¢þ
>WENV170121753
CENN01015140
[CENN] marine metagenome genome assembly TARA_023_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3256
3332
+
Asp
GTC
[ENA]
¢þ
>WENV170133439
CENU01026113
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1752
1828
+
Asp
GTC
[ENA]
¢þ
>WENV170159910
CEOK01101679
[CEOK] marine metagenome genome assembly TARA_030_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1609
1533
-
Asp
GTC
[ENA]
¢þ
>WENV170197701
CEPK01162833
[CEPK] marine metagenome genome assembly TARA_042_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
368
292
-
Asp
GTC
[ENA]
¢þ
>WENV170551653
CXWJ01016124
[CXWJ] wastewater metagenome; activated sludge
952
876
-
Asp
GTC
[ENA]
¢þ
>WENV170649376
JRYC01003394
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
6342
6418
+
Asp
GTC
[ENA]
¢þ
>WENV170767867
LXNH01007180
[LXNH] seawater metagenome; marine seawater
556
632
+
Asp
GTC
[ENA]
¢þ
>WENV170769968
LXNH01078663
[LXNH] seawater metagenome; marine seawater
13
89
+
Asp
GTC
[ENA]
¢þ
>WENV170832741
MDSZ01067711
[MDSZ] marine metagenome; seawater
9437
9513
+
Asp
GTC
[ENA]
¢þ
>C191028892
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
590439
590363
-
Asp
GTC
-
¡û
>C191118894
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
2205277
2205353
+
Asp
GTC
-
¡û
>C191220348
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
2210401
2210325
-
Asp
GTC
-
¡û
>C09107902
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
3216176
3216252
+
Asp
GTC
[Ensembl]
¡û
>W1910914014
NHSJ01000107
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
50318
50242
-
Asp
GTC
[ENA]
¡û
>W1810325500
PUEJ01000005
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
405211
405287
+
Asp
GTC
[ENA]
¡û
>W1810397225
PYDU01000051
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
5758
5834
+
Asp
GTC
[ENA]
¡û
>W1810489567
QBBW01000010
Alphaproteobacteria
Acuticoccus yangtzensis JL1095 [QBBW]
34276
34200
-
Asp
GTC
[ENA]
¡û
>W1810787656
QRDW01000001
Alphaproteobacteria
Aestuariispira insulae CECT 8488 [QRDW]
116063
115987
-
Asp
GTC
[ENA]
¡û
>WENV028700
AACY021139606
Marine microbial communities from Global Ocean Sampling (GOS)
277
355
+
Asp
GTC
[ENA]
>WENV078238
AAFZ01013290
Fossil microbial community from Whale Fall (Santa Cruz Basin)
226
304
+
Asp
GTC
[ENA]
>W1710015718
AQRB01000006
Alphaproteobacteria
Stappia sp. 22II-S9-Z10 [AQRB]
172166
172090
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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