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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229990 (65 seq.)
>WENV180581929
OCML01031814
[OCML] metagenome; diffuse fluid
180
256
+
Gly
TCC
[ENA]
¢þ
>WENV170112369
CEGE01004021
[CEGE] microbial mat metagenome; grass silage
19
95
+
Gly
TCC
[ENA]
¢þ
>WENV170112370
CEGE01004021
[CEGE] microbial mat metagenome; grass silage
145
221
+
Gly
TCC
[ENA]
¢þ
>WENV170597925
FUWD010019866
[FUWD] metagenome; unknown
307
383
+
Gly
TCC
[ENA]
¢þ
>WENV170614882
FUWD012843664
[FUWD] metagenome; unknown
14760
14836
+
Gly
TCC
[ENA]
¢þ
>WENV170615142
FUWD012850224
[FUWD] metagenome; unknown
6737
6661
-
Gly
TCC
[ENA]
¢þ
>WENV170615143
FUWD012850225
[FUWD] metagenome; unknown
120
44
-
Gly
TCC
[ENA]
¢þ
>WENV170640658
JFJP01023928
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
35985
35909
-
Gly
TCC
[ENA]
¢þ
>WENV170640674
JFJP01023935
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5705
5629
-
Gly
TCC
[ENA]
¢þ
>WENV170646385
JQGR01000603
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
542
466
-
Gly
TCC
[ENA]
¢þ
>WENV170646389
JQGR01000804
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
2689
2613
-
Gly
TCC
[ENA]
¢þ
>WENV170704840
LLEN01003072
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
280
207
-
Gly
TCC
[ENA]
¢þ
>WENV170704879
LLEN01007977
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
181
257
+
Gly
TCC
[ENA]
¢þ
>C181196987
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
2276167
2276091
-
Gly
TCC
-
¡û
>C181196993
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1977551
1977475
-
Gly
TCC
-
¡û
>C181196994
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1977427
1977351
-
Gly
TCC
-
¡û
>C181196995
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1977320
1977244
-
Gly
TCC
-
¡û
>C191084634
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
197879
197955
+
Gly
TCC
-
¡û
>C191084635
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
198004
198080
+
Gly
TCC
-
¡û
>C191084636
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
198104
198180
+
Gly
TCC
-
¡û
>C191084662
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
2389031
2388955
-
Gly
TCC
-
¡û
>W1911413054
NWVW01000006
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
18818
18894
+
Gly
TCC
[ENA]
¡û
>W1911413085
NWVW01000023
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
3519
3443
-
Gly
TCC
[ENA]
¡û
>W1911413086
NWVW01000023
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
3394
3318
-
Gly
TCC
[ENA]
¡û
>W1911413087
NWVW01000023
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
3294
3218
-
Gly
TCC
[ENA]
¡û
>W1911413124
NWVX01000022
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
18901
18977
+
Gly
TCC
[ENA]
¡û
>W1911413132
NWVX01000035
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
25481
25557
+
Gly
TCC
[ENA]
¡û
>W1911413133
NWVX01000035
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
25606
25682
+
Gly
TCC
[ENA]
¡û
>W1911413134
NWVX01000035
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
25706
25782
+
Gly
TCC
[ENA]
¡û
>W1911419368
NXAO01000015
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
119841
119765
-
Gly
TCC
[ENA]
¡û
>W1911419372
NXAO01000017
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
3452
3376
-
Gly
TCC
[ENA]
¡û
>W1911419373
NXAO01000017
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
3327
3251
-
Gly
TCC
[ENA]
¡û
>W1911419374
NXAO01000017
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
3227
3151
-
Gly
TCC
[ENA]
¡û
>W1911426180
NXID01000009
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
35934
35858
-
Gly
TCC
[ENA]
¡û
>W1911426194
NXID01000027
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
714
638
-
Gly
TCC
[ENA]
¡û
>W1911426210
NXID01000069
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
3441
3365
-
Gly
TCC
[ENA]
¡û
>W1911426211
NXID01000069
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
3319
3243
-
Gly
TCC
[ENA]
¡û
>W1911426276
NXIF01000031
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
18744
18820
+
Gly
TCC
[ENA]
¡û
>W1911426296
NXIF01000048
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
3482
3406
-
Gly
TCC
[ENA]
¡û
>W1911426297
NXIF01000048
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
3358
3282
-
Gly
TCC
[ENA]
¡û
>W1911426298
NXIF01000048
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
3251
3175
-
Gly
TCC
[ENA]
¡û
>W1911576178
PDJV01000002
Campylobacterota
Arcobacter sp. F2176 [PDJV]
256919
256843
-
Gly
TCC
[ENA]
¡û
>W1911576202
PDJV01000007
Campylobacterota
Arcobacter sp. F2176 [PDJV]
165485
165409
-
Gly
TCC
[ENA]
¡û
>W1911576219
PDJV01000012
Campylobacterota
Arcobacter sp. F2176 [PDJV]
17352
17428
+
Gly
TCC
[ENA]
¡û
>W1911576248
PDJW01000016
Campylobacterota
Malaciobacter mytili T234 [PDJW]
30829
30753
-
Gly
TCC
[ENA]
¡û
>W1911576255
PDJW01000060
Campylobacterota
Malaciobacter mytili T234 [PDJW]
3461
3385
-
Gly
TCC
[ENA]
¡û
>W1911576256
PDJW01000060
Campylobacterota
Malaciobacter mytili T234 [PDJW]
3339
3263
-
Gly
TCC
[ENA]
¡û
>W1911576270
PDJW01000074
Campylobacterota
Malaciobacter mytili T234 [PDJW]
734
658
-
Gly
TCC
[ENA]
¡û
>W1911576366
PDJY01000034
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
19812
19736
-
Gly
TCC
[ENA]
¡û
>W1911576370
PDJY01000037
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
25438
25514
+
Gly
TCC
[ENA]
¡û
>W1911576371
PDJY01000037
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
25563
25639
+
Gly
TCC
[ENA]
¡û
>W1911576823
PDKK01000001
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
416093
416169
+
Gly
TCC
[ENA]
¡û
>W1911576849
PDKK01000014
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
17840
17916
+
Gly
TCC
[ENA]
¡û
>W1911576854
PDKK01000018
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
9681
9605
-
Gly
TCC
[ENA]
¡û
>W1810295921
PTIW01000024
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
18803
18879
+
Gly
TCC
[ENA]
¡û
>W1810295927
PTIW01000037
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
3610
3534
-
Gly
TCC
[ENA]
¡û
>W1810295928
PTIW01000037
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
3485
3409
-
Gly
TCC
[ENA]
¡û
>W1810295929
PTIW01000037
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
3385
3309
-
Gly
TCC
[ENA]
¡û
>C10100558
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2695732
2695808
+
Gly
TCC
[Ensembl]
¡û
>C10100572
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2639349
2639273
-
Gly
TCC
[Ensembl]
¡û
>C10100582
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2284038
2283962
-
Gly
TCC
[Ensembl]
¡û
>W1710602814
FUYO01000001
Campylobacterota
Malaciobacter marinus [FUYO]
18792
18868
+
Gly
TCC
[ENA]
¡û
>W1710602853
FUYO01000040
Campylobacterota
Malaciobacter marinus [FUYO]
19083
19159
+
Gly
TCC
[ENA]
¡û
>W1710602854
FUYO01000040
Campylobacterota
Malaciobacter marinus [FUYO]
19208
19284
+
Gly
TCC
[ENA]
¡û
>W1710602855
FUYO01000040
Campylobacterota
Malaciobacter marinus [FUYO]
19308
19384
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK