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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.230062 (21 seq.)
>WENV180110961
OAPN01016971
[OAPN] marine metagenome; 2011
335
409
+
Lys
TTT
[ENA]
¢þ
>WENV180391192
OBPM01034450
[OBPM] marine metagenome; ENVO:00002010
182
256
+
Lys
TTT
[ENA]
¢þ
>WENV181321052
OFKJ01023087
[OFKJ] marine metagenome; sea ice
485
409
-
Lys
TTT
[ENA]
¢þ
>WENV181324134
OFLC01000380
[OFLC] marine metagenome; melt pond
907
983
+
Lys
TTT
[ENA]
¢þ
>WENV181324509
OFLF01000176
[OFLF] marine metagenome; melt pond
1819
1895
+
Lys
TTT
[ENA]
¢þ
>WENV181368435
OFQL01004665
[OFQL] freshwater metagenome; Freshwater Lake
279
205
-
Lys
TTT
[ENA]
¢þ
>WENV181370349
OFQS01004855
[OFQS] freshwater metagenome; Freshwater Lake
183
109
-
Lys
TTT
[ENA]
¢þ
>WENV183615534
OOEB01033558
[OOEB] marine metagenome; sea ice
93
169
+
Lys
TTT
[ENA]
¢þ
>WENV183617619
OOEG01020471
[OOEG] marine metagenome; sea ice
569
645
+
Lys
TTT
[ENA]
¢þ
>WENV183620894
OOFT01000008
[OOFT] marine metagenome; sea ice
362
286
-
Lys
TTT
[ENA]
¢þ
>WENV170601985
FUWD010206968
[FUWD] metagenome; unknown
376
452
+
Lys
TTT
[ENA]
¢þ
>WENV170606186
FUWD010629533
[FUWD] metagenome; unknown
235
309
+
Lys
TTT
[ENA]
¢þ
>WENV170622963
FUWD013129439
[FUWD] metagenome; unknown
626
552
-
Lys
TTT
[ENA]
¢þ
>WENV170631197
FUWD013342549
[FUWD] metagenome; unknown
626
552
-
Lys
TTT
[ENA]
¢þ
>C181002043
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
1116958
1117034
+
Lys
TTT
-
¡û
>C181194485
CP030929
Actinomycetota
Aurantimicrobium sp. MWH-Uga1 [CP030929]
258597
258523
-
Lys
TTT
-
¡û
>C191178330
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
1090526
1090602
+
Lys
TTT
-
¡û
>C191178369
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
1067093
1067169
+
Lys
TTT
-
¡û
>C191178408
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
1049426
1049502
+
Lys
TTT
-
¡û
>C151025298
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
366517
366443
-
Lys
TTT
[Ensembl]
¡û
>WENV058473
AACY023330320
Marine microbial communities from Global Ocean Sampling (GOS)
751
827
+
Lys
TTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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