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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.231197 (16 seq.)
>w019750
AAUK01000017
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
32100
32178
+
Ile
GAT
[ENA]
¡û
>WENV180097702
MTBK01205380
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
4699
4623
-
Ile
GAT
[ENA]
¢þ
>WENV181285466
OFGS01000644
[OFGS] hot springs metagenome; Water and soil
1415
1491
+
Ile
GAT
[ENA]
¢þ
>WENV181408829
OGCH01016234
[OGCH] hot springs metagenome; hot springs
188
264
+
Ile
GAT
[ENA]
¢þ
>C08004992
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1283832
1283759
-
Ile
GAT
[Ensembl]
¡û
>C08005008
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
812816
812743
-
Ile
GAT
[Ensembl]
¡û
>W1910573562
JPMG01000073
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
7393
7317
-
Ile
GAT
[ENA]
¡û
>W1910573566
JPMH01000006
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
19863
19787
-
Ile
GAT
[ENA]
¡û
>W1511355444
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1901941
1901865
-
Ile
GAT
[ENA]
¡û
>W1511355462
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
732508
732432
-
Ile
GAT
[ENA]
¡û
>C121009877
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
279704
279780
+
Ile
GAT
[Ensembl]
¡û
>C121009903
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1638863
1638787
-
Ile
GAT
[Ensembl]
¡û
>C161034996
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1121179
1121103
-
Ile
GAT
[Ensembl]
¡û
>C161035005
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
199904
199828
-
Ile
GAT
[Ensembl]
¡û
>W121010853
AGJO01000007
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
114418
114342
-
Ile
GAT
[ENA]
¡û
>W1710593368
FRDJ01000020
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
20106
20030
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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