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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232121 (113 seq.)
>W1710876698
LMPL01000002
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
671228
671152
-
Pro
TGG
[ENA]
¡û
>W1710878909
LMRI01000003
Actinomycetota
Rhodococcus sp. Leaf7 [LMRI]
144246
144320
+
Pro
TGG
[ENA]
¡û
>W1710879349
LMRP01000004
Actinomycetota
Rhodococcus sp. Leaf247 [LMRP]
144276
144350
+
Pro
TGG
[ENA]
¡û
>W1710881418
LMTB01000007
Actinomycetota
Dietzia timorensis [LMTB]
13033
13107
+
Pro
TGG
[ENA]
¡û
>W1710994938
LPZN01000013
Actinomycetota
Rhodococcus gordoniae [LPZN]
55652
55728
+
Pro
TGG
[ENA]
¡û
>W1711050311
LRRK01000058
Actinomycetota
Rhodococcus rhodochrous [LRRK]
266
342
+
Pro
TGG
[ENA]
¡û
>W1711050339
LRRL01000037
Actinomycetota
Rhodococcus ruber [LRRL]
3238
3314
+
Pro
TGG
[ENA]
¡û
>W1711069516
LSFR01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
428
354
-
Pro
TGG
[ENA]
¡û
>W1711080643
LSRE01000048
Actinomycetota
Tsukamurella pseudospumae [LSRE]
142764
142838
+
Pro
TGG
[ENA]
¡û
>W1711080669
LSRF01000023
Actinomycetota
Tsukamurella pseudospumae [LSRF]
17896
17822
-
Pro
TGG
[ENA]
¡û
>W1711080830
LSRI01000022
Actinomycetota
Tsukamurella pulmonis [LSRI]
797724
797798
+
Pro
TGG
[ENA]
¡û
>W1711080921
LSRJ01000037
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
97770
97844
+
Pro
TGG
[ENA]
¡û
>W1711081654
LSSV01000093
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
82086
82010
-
Pro
TGG
[ENA]
¡û
>W1711082322
LSTT01000386
Actinomycetota
Dietzia cinnamea [LSTT]
128908
128984
+
Pro
TGG
[ENA]
¡û
>W1711129390
LUTX01000012
Actinomycetota
Rhodococcus sp. HS-D2 [LUTX]
123544
123468
-
Pro
TGG
[ENA]
¡û
>W1711281608
LZMI01000014
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
105677
105603
-
Pro
TGG
[ENA]
¡û
>W1711281693
LZMJ01000081
Actinomycetota
Rhodococcus sp. 852002-51564_SCH6189132-a [LZMJ]
1724
1648
-
Pro
TGG
[ENA]
¡û
>W1711281911
LZMO01000206
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
1791
1865
+
Pro
TGG
[ENA]
¡û
>W1711286455
LZTC01000023
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
47047
47121
+
Pro
TGG
[ENA]
¡û
>W1711286510
LZTD01000070
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
91267
91341
+
Pro
TGG
[ENA]
¡û
>W1711286553
LZTE01000034
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
91268
91342
+
Pro
TGG
[ENA]
¡û
>W1711460622
MJEJ01000048
Actinomycetota
Williamsia sp. 1138 [MJEJ]
247949
247875
-
Pro
TGG
[ENA]
¡û
>W1711662757
MQUQ01000020
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
118604
118530
-
Pro
TGG
[ENA]
¡û
>C171044546
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
1282473
1282547
+
Pro
TGG
-
¡û
>W131059064
ANGC01000010
Actinomycetota
Rhodococcus ruber Chol-4 [ANGC]
2813
2889
+
Pro
TGG
[ENA]
¡û
>W131099096
AOSR01000013
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
220897
220821
-
Pro
TGG
[ENA]
¡û
>W131185125
ARTM01000030
Actinomycetota
Nocardia sp. 348MFTsu5.1 [ARTM]
94356
94430
+
Pro
TGG
[ENA]
¡û
>WENV181169887
OEIV010013749
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1889
1813
-
Pro
TGG
[ENA]
¢þ
>W141194609
AYTE01000031
Actinomycetota
Williamsia sp. D3 [AYTE]
68817
68743
-
Pro
TGG
[ENA]
¡û
>W141451911
JFBM01000019
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
113976
113902
-
Pro
TGG
[ENA]
¡û
>PL191001647
LR134452
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:10 (LR134452)
112629
112703
+
Pro
TGG
[ENA]
¡û
>C181017391
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
1224249
1224325
+
Pro
TGG
-
¡û
>C181019537
CP016353
Actinomycetota
Prauserella marina DSM 45268 [CP016353]
1883405
1883331
-
Pro
TGG
-
¡û
>C181035850
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
1690784
1690710
-
Pro
TGG
-
¡û
>C181099285
CP024315
Actinomycetota
Rhodococcus ruber P14 [CP024315]
148721
148797
+
Pro
TGG
-
¡û
>C181107045
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
1213369
1213445
+
Pro
TGG
-
¡û
>C181148319
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
2424466
2424542
+
Pro
TGG
-
¡û
>C181175132
CP029146
Actinomycetota
Rhodococcus ruber SD3 [CP029146]
2012581
2012657
+
Pro
TGG
-
¡û
>C181215437
LS483468
Actinomycetota
Rhodococcus coprophilus NCTC10994 [LS483468]
1169133
1169057
-
Pro
TGG
-
¡û
>C191182133
CP040719
Actinomycetota
Rhodococcus pyridinivorans YF3 [CP040719]
1688267
1688343
+
Pro
TGG
-
¡û
>W141702684
JMLQ01000004
Actinomycetota
Rhodococcus sp. UNC23MFCrub1.1 [JMLQ]
213062
213136
+
Pro
TGG
[ENA]
¡û
>W141712107
JMQI01000014
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
66297
66221
-
Pro
TGG
[ENA]
¡û
>W141760697
JOAF01000001
Actinomycetota
Microbispora sp. NRRL B-24597 [JOAF]
714507
714433
-
Pro
TGG
[ENA]
¡û
>W1910424340
FVPM01000035
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1064 [FVPM]
19710
19784
+
Pro
TGG
[ENA]
¡û
>W1910584587
JXXO01000054
Actinomycetota
Rhodococcus ruber OA1 [JXXO]
2876
2952
+
Pro
TGG
[ENA]
¡û
>W1911279016
NTGA01000018
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
100827
100751
-
Pro
TGG
[ENA]
¡û
>W1911422560
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
1167555
1167479
-
Pro
TGG
[ENA]
¡û
>W1911717742
QQQF01000219
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
44345
44271
-
Pro
TGG
[ENA]
¡û
>W1810367259
PVXK01000001
Actinomycetota
Rhodococcus rhodochrous EP4 [PVXK]
1870181
1870105
-
Pro
TGG
[ENA]
¡û
>W1810477508
QAOW01000001
Actinomycetota
Rhodococcus sp. OK519 [QAOW]
1062497
1062573
+
Pro
TGG
[ENA]
¡û
>W1810580852
QETM01000002
Actinomycetota
Dietzia maris AMT [QETM]
47745
47669
-
Pro
TGG
[ENA]
¡û
>W1810608691
QGTN01000001
Actinomycetota
Prauserella marina DSM 45268 [QGTN]
1291284
1291358
+
Pro
TGG
[ENA]
¡û
>W1810658269
QJJF01000002
Actinomycetota
Williamsia faeni DSM 45372 [QJJF]
88769
88843
+
Pro
TGG
[ENA]
¡û
>W1810671200
QJSP01000014
Actinomycetota
Williamsia limnetica DSM 45521 [QJSP]
95637
95711
+
Pro
TGG
[ENA]
¡û
>W1810722002
QNTT01000015
Actinomycetota
Dietzia maris SST1 [QNTT]
65294
65370
+
Pro
TGG
[ENA]
¡û
>W1810760473
QPKD01000070
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
22934
23008
+
Pro
TGG
[ENA]
¡û
>W1510001807
AZYO01000068
Actinomycetota
Rhodococcus rhodochrous KG-21 [AZYO]
33313
33237
-
Pro
TGG
[ENA]
¡û
>W1510020133
BBXP01000027
Actinomycetota
Rhodococcus rhodochrous NBRC 16069 [BBXP]
39638
39562
-
Pro
TGG
[ENA]
¡û
>C10113673
CP001966
Actinomycetota
Tsukamurella paurometabola DSM 20162 [CP001966]
1519058
1519134
+
Pro
TGG
[Ensembl]
¡û
>W1511303361
JPJJ01000002
Actinomycetota
Rhodococcus sp. p52 [JPJJ]
119313
119389
+
Pro
TGG
[ENA]
¡û
>W1511401659
JTIZ01000122
Actinomycetota
Rhodococcus sp. Chr-9 [JTIZ]
117919
117995
+
Pro
TGG
[ENA]
¡û
>W1511509004
JXQS01000003
Actinomycetota
Rhodococcus sp. MEB064 [JXQS]
34581
34655
+
Pro
TGG
[ENA]
¡û
>W11139509
AEKG01000048
Actinomycetota
Dietzia cinnamea P4 [AEKG]
10207
10131
-
Pro
TGG
[ENA]
¡û
>W1511518893
JXYP01000016
Actinomycetota
Williamsia herbipolensis ARP1 [JXYP]
747
823
+
Pro
TGG
[ENA]
¡û
>W1511583136
LATQ01000001
Actinomycetota
Rhodococcus sp. IITR03 [LATQ]
473106
473030
-
Pro
TGG
[ENA]
¡û
>W1511640276
LDTZ01000013
Actinomycetota
Gordonia jacobaea mv1 [LDTZ]
37797
37871
+
Pro
TGG
[ENA]
¡û
>W11155972
AFAQ01001954
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
119903
119979
+
Pro
TGG
[ENA]
¡û
>W11178757
AGFF01000008
Actinomycetota
Dietzia alimentaria 72 [AGFF]
32851
32927
+
Pro
TGG
[ENA]
¡û
>W1610040491
AZXY01000002
Actinomycetota
Rhodococcus pyridinivorans KG-16 [AZXY]
358840
358764
-
Pro
TGG
[ENA]
¡û
>W1610048654
BBEG01000079
Actinomycetota
Rhodococcus sp. JCM 9791 [BBEG]
2105
2181
+
Pro
TGG
[ENA]
¡û
>W1610048709
BBEH01000280
Actinomycetota
Rhodococcus sp. JCM 9793 [BBEH]
4569
4493
-
Pro
TGG
[ENA]
¡û
>W121021556
AGVW02000025
Actinomycetota
Rhodococcus rhodochrous BKS6-46 [AGVW]
23952
24028
+
Pro
TGG
[ENA]
¡û
>W121024635
AHBW01000033
Actinomycetota
Rhodococcus pyridinivorans AK37 [AHBW]
45432
45508
+
Pro
TGG
[ENA]
¡û
>W121060036
AJFC01000070
Actinomycetota
Rhodococcus sp. P14 [AJFC]
2124
2048
-
Pro
TGG
[ENA]
¡û
>W121068674
AJVB01000558
Actinomycetota
Rhodococcus sp. R1101 [AJVB]
556
480
-
Pro
TGG
[ENA]
¡û
>W121124296
BAFB01000217
Actinomycetota
Gordonia otitidis NBRC 100426 [BAFB]
28929
29005
+
Pro
TGG
[ENA]
¡û
>W121124341
BAFC01000112
Actinomycetota
Gordonia sputi NBRC 100414 [BAFC]
3795
3721
-
Pro
TGG
[ENA]
¡û
>W1610187926
FBUK01000074
Actinomycetota
Rhodococcus rhodochrous [FBUK]
3601
3677
+
Pro
TGG
[ENA]
¡û
>W1610739044
LMPL01000002
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
671228
671152
-
Pro
TGG
[ENA]
¡û
>W1610741255
LMRI01000003
Actinomycetota
Rhodococcus sp. Leaf7 [LMRI]
144246
144320
+
Pro
TGG
[ENA]
¡û
>W1610741695
LMRP01000004
Actinomycetota
Rhodococcus sp. Leaf247 [LMRP]
144276
144350
+
Pro
TGG
[ENA]
¡û
>W1610743764
LMTB01000007
Actinomycetota
Dietzia timorensis [LMTB]
13033
13107
+
Pro
TGG
[ENA]
¡û
>W1610849595
LPZN01000013
Actinomycetota
Rhodococcus gordoniae [LPZN]
55652
55728
+
Pro
TGG
[ENA]
¡û
>W1610891440
LRRK01000058
Actinomycetota
Rhodococcus rhodochrous [LRRK]
266
342
+
Pro
TGG
[ENA]
¡û
>W1610891468
LRRL01000037
Actinomycetota
Rhodococcus ruber [LRRL]
3238
3314
+
Pro
TGG
[ENA]
¡û
>W1610910044
LSFR01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
428
354
-
Pro
TGG
[ENA]
¡û
>W1610919510
LSRE01000048
Actinomycetota
Tsukamurella pseudospumae [LSRE]
142764
142838
+
Pro
TGG
[ENA]
¡û
>W1610919536
LSRF01000023
Actinomycetota
Tsukamurella pseudospumae [LSRF]
17896
17822
-
Pro
TGG
[ENA]
¡û
>W1610919697
LSRI01000022
Actinomycetota
Tsukamurella pulmonis [LSRI]
797724
797798
+
Pro
TGG
[ENA]
¡û
>W1610919788
LSRJ01000037
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
97770
97844
+
Pro
TGG
[ENA]
¡û
>W1610920489
LSSV01000093
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
82086
82010
-
Pro
TGG
[ENA]
¡û
>W1610921107
LSTT01000386
Actinomycetota
Dietzia cinnamea [LSTT]
128908
128984
+
Pro
TGG
[ENA]
¡û
>W1610940463
LUTX01000012
Actinomycetota
Rhodococcus sp. HS-D2 [LUTX]
123544
123468
-
Pro
TGG
[ENA]
¡û
>W1611040893
LZMI01000014
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
105677
105603
-
Pro
TGG
[ENA]
¡û
>W1611040978
LZMJ01000081
Actinomycetota
Rhodococcus sp. 852002-51564_SCH6189132-a [LZMJ]
1724
1648
-
Pro
TGG
[ENA]
¡û
>W1611041196
LZMO01000206
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
1791
1865
+
Pro
TGG
[ENA]
¡û
>W1611044016
LZTC01000023
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
47047
47121
+
Pro
TGG
[ENA]
¡û
>W1611044071
LZTD01000070
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
91267
91341
+
Pro
TGG
[ENA]
¡û
>W1611044114
LZTE01000034
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
91268
91342
+
Pro
TGG
[ENA]
¡û
>W1710037605
AZXY01000002
Actinomycetota
Rhodococcus pyridinivorans KG-16 [AZXY]
358840
358764
-
Pro
TGG
[ENA]
¡û
>W1710045126
BBEG01000079
Actinomycetota
Rhodococcus sp. JCM 9791 [BBEG]
2105
2181
+
Pro
TGG
[ENA]
¡û
>W1710045181
BBEH01000280
Actinomycetota
Rhodococcus sp. JCM 9793 [BBEH]
4569
4493
-
Pro
TGG
[ENA]
¡û
>W1710071744
BCWV01000004
Actinomycetota
Rhodococcus corynebacterioides NBRC 14404 [BCWV]
535264
535188
-
Pro
TGG
[ENA]
¡û
>W1710072197
BCXE01000021
Actinomycetota
Rhodococcus ruber NBRC 15591 [BCXE]
325975
325899
-
Pro
TGG
[ENA]
¡û
>W1710072253
BCXF01000015
Actinomycetota
Rhodococcus triatomae NBRC 103116 [BCXF]
116204
116280
+
Pro
TGG
[ENA]
¡û
>W1710189542
FBUK01000074
Actinomycetota
Rhodococcus rhodochrous [FBUK]
3601
3677
+
Pro
TGG
[ENA]
¡û
>W1710512133
FMZE01000001
Actinomycetota
Prauserella marina [FMZE]
81851
81775
-
Pro
TGG
[ENA]
¡û
>W1710517708
FNDN01000002
Actinomycetota
Rhodococcus triatomae [FNDN]
406517
406441
-
Pro
TGG
[ENA]
¡û
>W1710534534
FNRX01000002
Actinomycetota
Rhodococcus pyridinivorans [FNRX]
3579272
3579196
-
Pro
TGG
[ENA]
¡û
>W1710536152
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
1956317
1956391
+
Pro
TGG
[ENA]
¡û
>W1710555488
FOJN01000001
Actinomycetota
Rhodococcus kroppenstedtii [FOJN]
357620
357544
-
Pro
TGG
[ENA]
¡û
>W1710598137
FTNT01000008
Actinomycetota
Williamsia sterculiae [FTNT]
189343
189267
-
Pro
TGG
[ENA]
¡û
>W1710608374
FXAV01000001
Actinomycetota
Rhodococcus rhodochrous J3 [FXAV]
109563
109639
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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