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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23222 (36 seq.)
>W1711250079
LYMK01000010
Betaproteobacteria
Variovorax sp. JS1663 [LYMK]
42104
42194
+
Ser
CGA
[ENA]
¡û
>W1711250080
LYMK01000010
Betaproteobacteria
Variovorax sp. JS1663 [LYMK]
124345
124255
-
Ser
CGA
[ENA]
¡û
>W1711504469
MKUP01000008
Betaproteobacteria
Burkholderiales bacterium 67-32 [MKUP]
81053
81143
+
Ser
CGA
[ENA]
¡û
>W1711582083
MNUX01000114
Betaproteobacteria
Gallionellaceae bacterium CG1_02_60_325 [MNUX]
5218
5308
+
Ser
CGA
[ENA]
¡û
>W1712102807
NINX01000038
Betaproteobacteria
Pigmentiphaga sp. NML030171 [NINX]
8549
8459
-
Ser
CGA
[ENA]
¡û
>C171115873
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
3935120
3935210
+
Ser
CGA
-
¡û
>W131052701
AMZF01000121
Betaproteobacteria
Pusillimonas noertemannii BS8 [AMZF]
43648
43738
+
Ser
CGA
[ENA]
¡û
>W131180655
ARNH01000001
Betaproteobacteria
Bordetella sp. FB-8 [ARNH]
255346
255436
+
Ser
CGA
[ENA]
¡û
>WENV181173081
OEIV011184833
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
204
114
-
Ser
CGA
[ENA]
¢þ
>C08001903
AM902716
Betaproteobacteria
Bordetella petrii DSM 12804 [AM902716]
1650711
1650624
-
Ser
CGA
[Ensembl]
¡û
>WENV183728079
PJTP01028709
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
217
307
+
Ser
CGA
[ENA]
¢þ
>WENV183739170
PJUE01002604
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
3390
3300
-
Ser
CGA
[ENA]
¢þ
>WENV183740345
PJUF01001279
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
7433
7343
-
Ser
CGA
[ENA]
¢þ
>WENV183740873
PJUF01014332
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
537
627
+
Ser
CGA
[ENA]
¢þ
>WENV170551267
CXWJ01002618
[CXWJ] wastewater metagenome; activated sludge
246
336
+
Ser
CGA
[ENA]
¢þ
>WENV170552315
CXWJ01054641
[CXWJ] wastewater metagenome; activated sludge
122
212
+
Ser
CGA
[ENA]
¢þ
>C181227132
LT907988
Betaproteobacteria
Orrella dioscoreae [LT907988]
1294155
1294065
-
Ser
CGA
-
¡û
>C191116938
CP033966
Betaproteobacteria
Pigmentiphaga sp. H8 [CP033966]
1686825
1686915
+
Ser
CGA
-
¡û
>W1910890548
NEVI01000005
Betaproteobacteria
Bordetella genomosp. 7 7 AU23756 [NEVI]
171733
171643
-
Ser
CGA
[ENA]
¡û
>W1910890644
NEVK01000003
Betaproteobacteria
Bordetella genomosp. 7 7 AU18089 [NEVK]
340740
340650
-
Ser
CGA
[ENA]
¡û
>W1810063607
PDUX01000001
Betaproteobacteria
Pusillimonas noertemannii DSM 10065 [PDUX]
438402
438312
-
Ser
CGA
[ENA]
¡û
>W1810089045
PGEK01000033
Betaproteobacteria
Castellaniella caeni CD04 [PGEK]
5104
5194
+
Ser
CGA
[ENA]
¡û
>W1810252077
PQGA01000015
Betaproteobacteria
Paraburkholderia eburnea JCM 18070 [PQGA]
115947
116037
+
Ser
CGA
[ENA]
¡û
>W1810573172
QEKO01000001
Betaproteobacteria
Pusillimonas noertemannii DSM 10065 [QEKO]
1029464
1029554
+
Ser
CGA
[ENA]
¡û
>W1511310233
JPQD01000297
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
17
107
+
Ser
CGA
[ENA]
¡û
>C11118193
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
2044561
2044651
+
Ser
CGA
[Ensembl]
¡û
>W1610047745
BBDP01000162
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
974
1064
+
Ser
CGA
[ENA]
¡û
>W1610074250
BCWN01000003
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
183804
183714
-
Ser
CGA
[ENA]
¡û
>W1610447595
FKBS01000014
Betaproteobacteria
Bordetella ansorpii [FKBS]
1328527
1328437
-
Ser
CGA
[ENA]
¡û
>W1610459372
FKIF01000009
Betaproteobacteria
Bordetella ansorpii [FKIF]
332503
332593
+
Ser
CGA
[ENA]
¡û
>W1610506781
FLRC01000008
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
14008
14098
+
Ser
CGA
[ENA]
¡û
>W1710044255
BBDP01000162
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
974
1064
+
Ser
CGA
[ENA]
¡û
>W1710071368
BCWN01000003
Betaproteobacteria
Castellaniella caeni NBRC 101664 [BCWN]
183804
183714
-
Ser
CGA
[ENA]
¡û
>W1710447223
FKBS01000014
Betaproteobacteria
Bordetella ansorpii [FKBS]
1328527
1328437
-
Ser
CGA
[ENA]
¡û
>W1710459000
FKIF01000009
Betaproteobacteria
Bordetella ansorpii [FKIF]
332503
332593
+
Ser
CGA
[ENA]
¡û
>W1710499002
FLRC01000008
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
14008
14098
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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