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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232538 (109 seq.)
>W1710786652
LJJB01000010
Bacillota
Brevibacillus choshinensis [LJJB]
1830558
1830639
+
Leu
CAA
[ENA]
¡û
>W1710786699
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
923367
923448
+
Leu
CAA
[ENA]
¡û
>W1710786728
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1198190
1198109
-
Leu
CAA
[ENA]
¡û
>W1710786750
LJJB01000015
Bacillota
Brevibacillus choshinensis [LJJB]
279321
279240
-
Leu
CAA
[ENA]
¡û
>W1710876788
LMPN01000033
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
614571
614490
-
Leu
CAA
[ENA]
¡û
>W1711009660
LQQV01000062
Bacillota
Brevibacillus parabrevis [LQQV]
1193
1274
+
Leu
CAA
[ENA]
¡û
>W1711009684
LQQV01000080
Bacillota
Brevibacillus parabrevis [LQQV]
16214
16295
+
Leu
CAA
[ENA]
¡û
>W1711009707
LQQV01000126
Bacillota
Brevibacillus parabrevis [LQQV]
235176
235257
+
Leu
CAA
[ENA]
¡û
>W1711168628
LVYG01000001
Bacillota
Brevibacillus brevis [LVYG]
273642
273723
+
Leu
CAA
[ENA]
¡û
>W1711168646
LVYG01000012
Bacillota
Brevibacillus brevis [LVYG]
1206
1287
+
Leu
CAA
[ENA]
¡û
>W1711168716
LVYG01000058
Bacillota
Brevibacillus brevis [LVYG]
12
93
+
Leu
CAA
[ENA]
¡û
>W1711799985
MXAR01000006
Bacillota
Brevibacillus brevis [MXAR]
3923
4004
+
Leu
CAA
[ENA]
¡û
>W1711800005
MXAR01000022
Bacillota
Brevibacillus brevis [MXAR]
146549
146630
+
Leu
CAA
[ENA]
¡û
>W1711800040
MXAR01000026
Bacillota
Brevibacillus brevis [MXAR]
31429
31510
+
Leu
CAA
[ENA]
¡û
>W1711800078
MXAR01000066
Bacillota
Brevibacillus brevis [MXAR]
211
292
+
Leu
CAA
[ENA]
¡û
>W131006828
AHKL01000053
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
620
701
+
Leu
CAA
[ENA]
¡û
>W131006848
AHKL01000072
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
387321
387402
+
Leu
CAA
[ENA]
¡û
>W131086544
AOBR01000360
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
1231
1312
+
Leu
CAA
[ENA]
¡û
>W141026739
AKYF01000010
Bacillota
Brevibacillus brevis X23 [AKYF]
1369238
1369157
-
Leu
CAA
[ENA]
¡û
>W141026761
AKYF01000014
Bacillota
Brevibacillus brevis X23 [AKYF]
1321
1402
+
Leu
CAA
[ENA]
¡û
>W141093515
AVBJ01000034
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
33380
33461
+
Leu
CAA
[ENA]
¡û
>W141093537
AVBJ01000054
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
23498
23417
-
Leu
CAA
[ENA]
¡û
>W141185459
AYJU01000015
Bacillota
Brevibacillus panacihumi W25 [AYJU]
422771
422690
-
Leu
CAA
[ENA]
¡û
>W141185506
AYJU01000017
Bacillota
Brevibacillus panacihumi W25 [AYJU]
102271
102190
-
Leu
CAA
[ENA]
¡û
>W141291565
JATL01000054
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
982
901
-
Leu
CAA
[ENA]
¡û
>WENV170582534
FUFK010085640
[FUFK] metagenome; unknown
416
335
-
Leu
CAA
[ENA]
¢þ
>WENV170594508
FUFK011340930
[FUFK] metagenome; unknown
43
124
+
Leu
CAA
[ENA]
¢þ
>WENV170595153
FUFK011650508
[FUFK] metagenome; unknown
497
416
-
Leu
CAA
[ENA]
¢þ
>C181030579
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
110878
110959
+
Leu
CAA
-
¡û
>C181030608
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
5475056
5475137
+
Leu
CAA
-
¡û
>C181030691
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
2531888
2531807
-
Leu
CAA
-
¡û
>C181081990
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
8038
8119
+
Leu
CAA
-
¡û
>C181082055
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
1152279
1152360
+
Leu
CAA
-
¡û
>C181082099
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
3682138
3682057
-
Leu
CAA
-
¡û
>C181188379
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
8170
8251
+
Leu
CAA
-
¡û
>C181188444
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
1137874
1137955
+
Leu
CAA
-
¡û
>C181188489
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
3529846
3529765
-
Leu
CAA
-
¡û
>C191041921
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
4815022
4814941
-
Leu
CAA
-
¡û
>C191041954
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
538337
538256
-
Leu
CAA
-
¡û
>C191207538
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
8045
8126
+
Leu
CAA
-
¡û
>C191207590
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
2717045
2717126
+
Leu
CAA
-
¡û
>C191207633
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
5097845
5097764
-
Leu
CAA
-
¡û
>W1910181761
BJMH01000056
Bacillota
Brevibacillus parabrevis NBRC 12334 [BJMH]
19872
19791
-
Leu
CAA
[ENA]
¡û
>W1910183496
BJNU01000003
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
103203
103122
-
Leu
CAA
[ENA]
¡û
>W1910183513
BJNU01000017
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
112973
112892
-
Leu
CAA
[ENA]
¡û
>W1910183531
BJNU01000141
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
283
364
+
Leu
CAA
[ENA]
¡û
>W1910183927
BJOD01000099
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
704
785
+
Leu
CAA
[ENA]
¡û
>W1910183930
BJOD01000166
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
641
560
-
Leu
CAA
[ENA]
¡û
>W1910183947
BJOE01000018
Bacillota
Brevibacillus centrosporus NBRC 15540 [BJOE]
80146
80065
-
Leu
CAA
[ENA]
¡û
>W1910183961
BJOE01000053
Bacillota
Brevibacillus centrosporus NBRC 15540 [BJOE]
115
196
+
Leu
CAA
[ENA]
¡û
>W1910184252
BJOL01000012
Bacillota
Brevibacillus formosus NBRC 15716 [BJOL]
219827
219746
-
Leu
CAA
[ENA]
¡û
>W1910184272
BJOL01000053
Bacillota
Brevibacillus formosus NBRC 15716 [BJOL]
271
352
+
Leu
CAA
[ENA]
¡û
>C09101396
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
8500
8581
+
Leu
CAA
[Ensembl]
¡û
>C09101461
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
1111855
1111936
+
Leu
CAA
[Ensembl]
¡û
>C09101506
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
3402842
3402761
-
Leu
CAA
[Ensembl]
¡û
>W1810001148
BEXF01000002
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
491914
491995
+
Leu
CAA
[ENA]
¡û
>W1810001161
BEXF01000005
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
328624
328705
+
Leu
CAA
[ENA]
¡û
>W1810001235
BEXF01000040
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
33915
33834
-
Leu
CAA
[ENA]
¡û
>W1810389890
PXXZ01000024
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
139539
139458
-
Leu
CAA
[ENA]
¡û
>W1810389897
PXXZ01000031
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
103799
103718
-
Leu
CAA
[ENA]
¡û
>W1810389932
PXXZ01000091
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
925
844
-
Leu
CAA
[ENA]
¡û
>W1810391303
PXZL01000030
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
179640
179559
-
Leu
CAA
[ENA]
¡û
>W1810391327
PXZL01000043
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
16380
16461
+
Leu
CAA
[ENA]
¡û
>W1810391347
PXZL01000048
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
11613
11532
-
Leu
CAA
[ENA]
¡û
>W1810391394
PXZM01000012
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
293217
293298
+
Leu
CAA
[ENA]
¡û
>W1810391419
PXZM01000036
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
158754
158835
+
Leu
CAA
[ENA]
¡û
>W1810391438
PXZM01000045
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
1277
1358
+
Leu
CAA
[ENA]
¡û
>W1810391469
PXZN01000012
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
626697
626616
-
Leu
CAA
[ENA]
¡û
>W1810391509
PXZN01000018
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
36
117
+
Leu
CAA
[ENA]
¡û
>W1810391543
PXZN01000020
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
1272
1353
+
Leu
CAA
[ENA]
¡û
>W1810391575
PXZO01000002
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
272922
272841
-
Leu
CAA
[ENA]
¡û
>W1810391629
PXZO01000042
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
228212
228293
+
Leu
CAA
[ENA]
¡û
>W1810391680
PXZO01000074
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
1413
1494
+
Leu
CAA
[ENA]
¡û
>W1810787351
QRDR01000001
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
767041
766960
-
Leu
CAA
[ENA]
¡û
>W1810787394
QRDR01000008
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
315849
315768
-
Leu
CAA
[ENA]
¡û
>W1810787449
QRDR01000057
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
1161
1080
-
Leu
CAA
[ENA]
¡û
>W1511629654
LDCN01000001
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
338892
338811
-
Leu
CAA
[ENA]
¡û
>W1511629680
LDCN01000003
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
903513
903594
+
Leu
CAA
[ENA]
¡û
>W1511629700
LDCN01000003
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
906561
906642
+
Leu
CAA
[ENA]
¡û
>W1511629716
LDCN01000004
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
948
1029
+
Leu
CAA
[ENA]
¡û
>W1511645829
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
586267
586348
+
Leu
CAA
[ENA]
¡û
>W1511645859
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
5899747
5899828
+
Leu
CAA
[ENA]
¡û
>W1511645911
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
2977995
2977914
-
Leu
CAA
[ENA]
¡û
>W1511699549
LGIQ01000005
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
955
1036
+
Leu
CAA
[ENA]
¡û
>W1511699580
LGIQ01000009
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
106361
106442
+
Leu
CAA
[ENA]
¡û
>W1511699607
LGIQ01000019
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
80
161
+
Leu
CAA
[ENA]
¡û
>W1511700090
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
1364453
1364534
+
Leu
CAA
[ENA]
¡û
>W1511700113
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
4646442
4646361
-
Leu
CAA
[ENA]
¡û
>W1511700176
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
3588474
3588393
-
Leu
CAA
[ENA]
¡û
>W121085018
AKIX01000095
Bacillota
Brevibacillus sp. BC25 [AKIX]
29828
29747
-
Leu
CAA
[ENA]
¡û
>W121085020
AKIX01000103
Bacillota
Brevibacillus sp. BC25 [AKIX]
18415
18496
+
Leu
CAA
[ENA]
¡û
>W121085031
AKIX01000131
Bacillota
Brevibacillus sp. BC25 [AKIX]
959
878
-
Leu
CAA
[ENA]
¡û
>W1610650507
LJJB01000010
Bacillota
Brevibacillus choshinensis [LJJB]
1830558
1830639
+
Leu
CAA
[ENA]
¡û
>W1610650554
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
923367
923448
+
Leu
CAA
[ENA]
¡û
>W1610650583
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1198190
1198109
-
Leu
CAA
[ENA]
¡û
>W1610650605
LJJB01000015
Bacillota
Brevibacillus choshinensis [LJJB]
279321
279240
-
Leu
CAA
[ENA]
¡û
>W1610739134
LMPN01000033
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
614571
614490
-
Leu
CAA
[ENA]
¡û
>W1610858180
LQQV01000062
Bacillota
Brevibacillus parabrevis [LQQV]
1193
1274
+
Leu
CAA
[ENA]
¡û
>W1610858204
LQQV01000080
Bacillota
Brevibacillus parabrevis [LQQV]
16214
16295
+
Leu
CAA
[ENA]
¡û
>W1610858227
LQQV01000126
Bacillota
Brevibacillus parabrevis [LQQV]
235176
235257
+
Leu
CAA
[ENA]
¡û
>W1610978423
LVYG01000001
Bacillota
Brevibacillus brevis [LVYG]
273642
273723
+
Leu
CAA
[ENA]
¡û
>W1610978441
LVYG01000012
Bacillota
Brevibacillus brevis [LVYG]
1206
1287
+
Leu
CAA
[ENA]
¡û
>W1610978511
LVYG01000058
Bacillota
Brevibacillus brevis [LVYG]
12
93
+
Leu
CAA
[ENA]
¡û
>W1710081073
BDFB01000004
Bacillota
Brevibacillus brevis [BDFB]
354274
354355
+
Leu
CAA
[ENA]
¡û
>W1710081112
BDFB01000010
Bacillota
Brevibacillus brevis [BDFB]
369000
369081
+
Leu
CAA
[ENA]
¡û
>W1710081187
BDFB01000022
Bacillota
Brevibacillus brevis [BDFB]
33749
33668
-
Leu
CAA
[ENA]
¡û
>W1710566103
FORT01000001
Bacillota
Brevibacillus centrosporus OK042 [FORT]
647326
647245
-
Leu
CAA
[ENA]
¡û
>W1710566105
FORT01000002
Bacillota
Brevibacillus centrosporus OK042 [FORT]
365922
366003
+
Leu
CAA
[ENA]
¡û
>W1710566199
FORT01000042
Bacillota
Brevibacillus centrosporus OK042 [FORT]
986
905
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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