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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232579 (16 seq.)
>WENV181368515
OFQL01015059
[OFQL] freshwater metagenome; Freshwater Lake
125
44
-
Leu
TAG
[ENA]
¢þ
>WENV181370372
OFQS01006520
[OFQS] freshwater metagenome; Freshwater Lake
170
89
-
Leu
TAG
[ENA]
¢þ
>WENV181377550
OFRA01016818
[OFRA] wastewater metagenome; Lake Maggiore Verbania
874
793
-
Leu
TAG
[ENA]
¢þ
>WENV181401143
OFSF01063362
[OFSF] wastewater metagenome; Exp Tend VB 100WW
497
416
-
Leu
TAG
[ENA]
¢þ
>WENV001890
AACY020053625
Marine microbial communities from Global Ocean Sampling (GOS)
1111
1192
+
Leu
TAG
[ENA]
>WENV170572720
FLOH01001211
[FLOH] marine metagenome; water
2174
2255
+
Leu
TAG
[ENA]
¢þ
>WENV170606014
FUWD010591626
[FUWD] metagenome; unknown
325
244
-
Leu
TAG
[ENA]
¢þ
>WENV170622116
FUWD013087963
[FUWD] metagenome; unknown
176
95
-
Leu
TAG
[ENA]
¢þ
>WENV170630317
FUWD013302907
[FUWD] metagenome; unknown
176
95
-
Leu
TAG
[ENA]
¢þ
>C181018693
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
1435039
1435120
+
Leu
TAG
-
¡û
>C181020906
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
229286
229205
-
Leu
TAG
-
¡û
>C181020980
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
225464
225383
-
Leu
TAG
-
¡û
>C181021164
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
226499
226418
-
Leu
TAG
-
¡û
>C181021389
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
251503
251422
-
Leu
TAG
-
¡û
>WENV057533
AACY023297881
Marine microbial communities from Global Ocean Sampling (GOS)
915
996
+
Leu
TAG
[ENA]
>WENV057642
AACY023301123
Marine microbial communities from Global Ocean Sampling (GOS)
861
942
+
Leu
TAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK