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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232726 (20 seq.)
>W131158380
AQUA01000001
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
129266
129347
+
Leu
TAG
[ENA]
¡û
>W131183106
ARRO01000003
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
46393
46474
+
Leu
TAG
[ENA]
¡û
>WENV181853423
OGWI01004604
[OGWI] freshwater metagenome; freshwater
274
353
+
Leu
TAG
[ENA]
¢þ
>WENV170625620
FUWD013201858
[FUWD] metagenome; unknown
2439
2358
-
Leu
TAG
[ENA]
¢þ
>WENV170633843
FUWD013404009
[FUWD] metagenome; unknown
2439
2358
-
Leu
TAG
[ENA]
¢þ
>C181018657
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
1328479
1328560
+
Leu
TAG
-
¡û
>C181020868
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
274864
274783
-
Leu
TAG
-
¡û
>C181021016
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
238999
238918
-
Leu
TAG
-
¡û
>C181021052
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
219083
219002
-
Leu
TAG
-
¡û
>C181021089
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
223880
223799
-
Leu
TAG
-
¡û
>C181021201
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
224673
224592
-
Leu
TAG
-
¡û
>C181021276
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
251853
251772
-
Leu
TAG
-
¡û
>C181021314
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
218876
218795
-
Leu
TAG
-
¡û
>WENV023506
AACY020732219
Marine microbial communities from Global Ocean Sampling (GOS)
609
528
-
Leu
TAG
[ENA]
>WENV032694
AACY021467853
Marine microbial communities from Global Ocean Sampling (GOS)
625
706
+
Leu
TAG
[ENA]
>WENV057458
AACY023295365
Marine microbial communities from Global Ocean Sampling (GOS)
944
863
-
Leu
TAG
[ENA]
>WENV057794
AACY023306876
Marine microbial communities from Global Ocean Sampling (GOS)
446
527
+
Leu
TAG
[ENA]
>WENV057815
AACY023307605
Marine microbial communities from Global Ocean Sampling (GOS)
1116
1035
-
Leu
TAG
[ENA]
>WENV057919
AACY023311243
Marine microbial communities from Global Ocean Sampling (GOS)
629
710
+
Leu
TAG
[ENA]
>WENV061240
AACY023427498
Marine microbial communities from Global Ocean Sampling (GOS)
481
562
+
Leu
TAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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