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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23385 (27 seq.)
>W1711385840
MEES01000043
Alphaproteobacteria
Paracoccus sp. SCN 68-21 [MEES]
9671
9760
+
Ser
CGA
[ENA]
¡û
>C171107678
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
2252874
2252785
-
Ser
CGA
-
¡û
>C171110753
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
72024
72113
+
Ser
CGA
-
¡û
>WENV180381426
OBOR01294370
[OBOR] marine metagenome; ENVO 00002227
120
31
-
Ser
CGA
[ENA]
¢þ
>WENV183732832
PJTX01019705
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
465
376
-
Ser
CGA
[ENA]
¢þ
>WENV170191619
CEPD01041172
[CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
324
413
+
Ser
CGA
[ENA]
¢þ
>C181116771
CP025408
Alphaproteobacteria
Paracoccus tegillarcae BM15 [CP025408]
3660090
3660179
+
Ser
CGA
-
¡û
>C181119667
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
1319624
1319713
+
Ser
CGA
-
¡û
>C191131969
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
2059004
2059093
+
Ser
CGA
-
¡û
>C191159573
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
1668740
1668829
+
Ser
CGA
-
¡û
>C141006360
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
1003532
1003443
-
Ser
CGA
[Ensembl]
¡û
>W1911813192
QZEV01000013
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
45238
45327
+
Ser
CGA
[ENA]
¡û
>W1810684506
QKYL01000198
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
9119
9030
-
Ser
CGA
[ENA]
¡û
>W1810759492
QPJL01000021
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
9839
9750
-
Ser
CGA
[ENA]
¡û
>W1510013660
BBPH01000023
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
29421
29332
-
Ser
CGA
[ENA]
¡û
>W1511348647
JRKP01000028
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
4911
5000
+
Ser
CGA
[ENA]
¡û
>W1511348690
JRKQ01000024
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
18592
18681
+
Ser
CGA
[ENA]
¡û
>W1511348750
JRKR01000100
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
10172
10261
+
Ser
CGA
[ENA]
¡û
>W1511348785
JRKS01000015
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
42815
42726
-
Ser
CGA
[ENA]
¡û
>W1511348839
JRKT01000052
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
4010
3921
-
Ser
CGA
[ENA]
¡û
>W1511518683
JXYF01000001
Alphaproteobacteria
Paracoccus sp. S4493 [JXYF]
24387
24476
+
Ser
CGA
[ENA]
¡û
>W1511526783
JYGY01000001
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
598785
598696
-
Ser
CGA
[ENA]
¡û
>W1710508099
FMVT01000006
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
868
779
-
Ser
CGA
[ENA]
¡û
>W1710513639
FNAH01000021
Alphaproteobacteria
Paracoccus isoporae [FNAH]
8340
8429
+
Ser
CGA
[ENA]
¡û
>W1710516810
FNCV01000004
Alphaproteobacteria
Roseospirillum parvum [FNCV]
178868
178779
-
Ser
CGA
[ENA]
¡û
>W1710528223
FNNA01000003
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
328611
328700
+
Ser
CGA
[ENA]
¡û
>W1710553414
FOHO01000014
Alphaproteobacteria
Paracoccus homiensis [FOHO]
8858
8769
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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