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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23397 (13 seq.)
>WENV170685774
LFRM01108212
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3280
3191
-
Ser
GGA
[ENA]
¢þ
>W1910635751
LNJZ01000006
Gammaproteobacteria
Thiopseudomonas denitrificans X2 [LNJZ]
18661
18750
+
Ser
GGA
[ENA]
¡û
>C151093955
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
503113
503024
-
Ser
GGA
-
¡û
>C151094007
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
481265
481176
-
Ser
GGA
-
¡û
>C151094045
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1732439
1732350
-
Ser
GGA
-
¡û
>C151094109
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
116309
116220
-
Ser
GGA
-
¡û
>C151094120
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
556016
556105
+
Ser
GGA
-
¡û
>C151094213
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
268224
268135
-
Ser
GGA
-
¡û
>C151094214
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
141439
141350
-
Ser
GGA
-
¡û
>C151094267
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
116477
116388
-
Ser
GGA
-
¡û
>C161041401
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
118507
118418
-
Ser
GGA
[Ensembl]
¡û
>W1610607235
LFTS01000088
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
3280
3191
-
Ser
GGA
[ENA]
¡û
>W1710728522
LFTS01000088
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
3280
3191
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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