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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23408 (42 seq.)
>W131063386
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1324466
1324378
-
Ser
CGA
[ENA]
¡û
>W131087184
AOCI01000164
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
6641
6729
+
Ser
CGA
[ENA]
¡û
>W131203764
ASZQ01000217
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
9068
8980
-
Ser
CGA
[ENA]
¡û
>W131203765
ASZQ01000219
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
21195
21283
+
Ser
CGA
[ENA]
¡û
>W1711377888
MDZH01000110
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
35449
35361
-
Ser
CGA
[ENA]
¡û
>W1711603041
MOLN01000160
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
5575
5663
+
Ser
CGA
[ENA]
¡û
>W1711772034
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
398917
398829
-
Ser
CGA
[ENA]
¡û
>C171016655
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
1218448
1218360
-
Ser
CGA
-
¡û
>C171112059
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
1750827
1750915
+
Ser
CGA
-
¡û
>W141065566
AQPY01000649
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
4338
4250
-
Ser
CGA
[ENA]
¡û
>W141242361
CAIH01000065
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
4403
4315
-
Ser
CGA
[ENA]
¡û
>W141242410
CAII01000356
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
6055
6143
+
Ser
CGA
[ENA]
¡û
>W141242455
CAIJ01000358
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
6900
6988
+
Ser
CGA
[ENA]
¡û
>W141242499
CAIK01000299
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
10041
9953
-
Ser
CGA
[ENA]
¡û
>W141242542
CAIL01000265
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
7636
7724
+
Ser
CGA
[ENA]
¡û
>W141242567
CAIM01000386
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
4090
4002
-
Ser
CGA
[ENA]
¡û
>W141242609
CAIN01000217
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
10214
10126
-
Ser
CGA
[ENA]
¡û
>W141242628
CAIO01000049
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
4981
4893
-
Ser
CGA
[ENA]
¡û
>W141242669
CAIP01000062
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
3555
3643
+
Ser
CGA
[ENA]
¡û
>W141242715
CAIQ01000150
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
46877
46789
-
Ser
CGA
[ENA]
¡û
>C08006354
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
3789916
3790004
+
Ser
CGA
[Ensembl]
¡û
>WENV182865706
OKRQ01000586
[OKRQ] freshwater metagenome; freshwater
1344
1432
+
Ser
CGA
[ENA]
¢þ
>WENV170680700
LFEF01011490
[LFEF] freshwater metagenome; waterbloom
12082
12170
+
Ser
CGA
[ENA]
¢þ
>C181046163
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
1609574
1609662
+
Ser
CGA
-
¡û
>C191007281
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
1718643
1718555
-
Ser
CGA
-
¡û
>W1910020338
BDSG01000005
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
46400
46312
-
Ser
CGA
[ENA]
¡û
>W1910020381
BDSM01000004
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
83035
83123
+
Ser
CGA
[ENA]
¡û
>W1910038651
BEIU01000002
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
307410
307322
-
Ser
CGA
[ENA]
¡û
>W1910038712
BEIV01000063
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
3691
3779
+
Ser
CGA
[ENA]
¡û
>W1910067342
BEYQ01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
22072
22160
+
Ser
CGA
[ENA]
¡û
>W1910067388
BFAC01000001
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
49222
49134
-
Ser
CGA
[ENA]
¡û
>W1910142348
BIFY01000141
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
5792
5880
+
Ser
CGA
[ENA]
¡û
>W1910665581
MCIH01000184
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
55102
55190
+
Ser
CGA
[ENA]
¡û
>W1910768668
MOLZ01000023
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
8226
8314
+
Ser
CGA
[ENA]
¡û
>C151079386
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
1219148
1219060
-
Ser
CGA
[Ensembl]
¡û
>C151080715
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
3195716
3195628
-
Ser
CGA
-
¡û
>W1510013637
BBPA01000057
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
14461
14549
+
Ser
CGA
[ENA]
¡û
>W1610550835
JXYX01000014
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
60766
60678
-
Ser
CGA
[ENA]
¡û
>W1710005092
AJUS01001286
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
1085
1173
+
Ser
CGA
[ENA]
¡û
>W1710005129
AJUT01001210
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
1023
1111
+
Ser
CGA
[ENA]
¡û
>W1710005165
AJUU01001197
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
1023
1111
+
Ser
CGA
[ENA]
¡û
>W1710660712
JXYX01000014
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
60766
60678
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK