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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23420 (41 seq.)
>W131229779
AUHA01000007
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
21028
20941
-
Ser
GCT
[ENA]
¡û
>C171030723
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
987438
987527
+
Ser
GCT
-
¡û
>C171104434
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
3204514
3204601
+
Ser
GCT
-
¡û
>W131169806
ARFA01000010
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
606
519
-
Ser
GCT
[ENA]
¡û
>W131169895
ARFC01000006
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
1070
983
-
Ser
GCT
[ENA]
¡û
>W131169944
ARFD01000077
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
12091
12178
+
Ser
GCT
[ENA]
¡û
>W141142867
AWRU01000023
Bacteroidota
Pedobacter sp. V48 [AWRU]
116608
116521
-
Ser
GCT
[ENA]
¡û
>W141187622
AYMG01000039
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
150408
150319
-
Ser
GCT
[ENA]
¡û
>WENV183743528
PJUJ01003729
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1056
969
-
Ser
GCT
[ENA]
¢þ
>WENV183745352
PJUL01034250
[PJUL] feces metagenome; Chicken feces enriched on filter paper
93
6
-
Ser
GCT
[ENA]
¢þ
>WENV170991485
MWWA01210513
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
127
216
+
Ser
GCT
[ENA]
¢þ
>WENV170996336
MWWF01222301
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
273
184
-
Ser
GCT
[ENA]
¢þ
>C181094336
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
764237
764326
+
Ser
GCT
-
¡û
>C181113150
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
638
551
-
Ser
GCT
-
¡û
>C181177177
CP029346
Bacteroidota
Aquirufa nivalisilvae HME7025 [CP029346]
1599021
1599108
+
Ser
GCT
-
¡û
>W09109941
ABUR01000038
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
35766
35679
-
Ser
GCT
[ENA]
¡û
>C191157551
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2266501
2266414
-
Ser
GCT
-
¡û
>W141727617
JNFF01000019
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
45185
45272
+
Ser
GCT
[ENA]
¡û
>W1911497298
OCNH01000008
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
24553
24466
-
Ser
GCT
[ENA]
¡û
>SRA1002047
SRR001308.209204
Metagenomic characterization of a wastewater treatment plant (SRP000180)
185
274
+
Ser
GCT
[SRA]
>SRA1002330
SRR001308.377657
Metagenomic characterization of a wastewater treatment plant (SRP000180)
186
275
+
Ser
GCT
[SRA]
>W1810474632
QAIL01000115
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
21626
21539
-
Ser
GCT
[ENA]
¡û
>W1810503916
QBKM01000004
Bacteroidota
Pedobacter sp. YR016 [QBKM]
1248
1159
-
Ser
GCT
[ENA]
¡û
>W1810596508
QGGO01000011
Bacteroidota
Arcicella aurantiaca DSM 22214 [QGGO]
56525
56438
-
Ser
GCT
[ENA]
¡û
>W1810676146
QKLU01000005
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
234425
234338
-
Ser
GCT
[ENA]
¡û
>W1810692055
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
24831
24918
+
Ser
GCT
[ENA]
¡û
>W1810693916
QLLR01000048
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
551
462
-
Ser
GCT
[ENA]
¡û
>C151068628
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
3973132
3973045
-
Ser
GCT
[Ensembl]
¡û
>C10111792
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
3230563
3230476
-
Ser
GCT
[Ensembl]
¡û
>W1511509446
JXRA01000146
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
30271
30360
+
Ser
GCT
[ENA]
¡û
>C161073053
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
607859
607772
-
Ser
GCT
[Ensembl]
¡û
>W1610612117
LGEL01000018
Bacteroidota
Pedobacter panaciterrae [LGEL]
20659
20572
-
Ser
GCT
[ENA]
¡û
>W1710519667
FNEX01000004
Bacteroidota
Pedobacter sp. ok626 [FNEX]
402195
402284
+
Ser
GCT
[ENA]
¡û
>W1710522176
FNGZ01000019
Bacteroidota
Pedobacter antarcticus [FNGZ]
21748
21837
+
Ser
GCT
[ENA]
¡û
>W1710533290
FNRA01000004
Bacteroidota
Pedobacter hartonius [FNRA]
284616
284529
-
Ser
GCT
[ENA]
¡û
>W1710558205
FOLQ01000014
Bacteroidota
Spirosoma endophyticum [FOLQ]
96775
96862
+
Ser
GCT
[ENA]
¡û
>W1710560847
FONS01000001
Bacteroidota
Pedobacter antarcticus [FONS]
918530
918617
+
Ser
GCT
[ENA]
¡û
>W1710563336
FOPP01000002
Bacteroidota
Pedobacter insulae [FOPP]
344678
344765
+
Ser
GCT
[ENA]
¡û
>W1710603652
FUZF01000020
Bacteroidota
Sphingobacterium nematocida [FUZF]
62351
62262
-
Ser
GCT
[ENA]
¡û
>W1710606781
FWYB01000004
Bacteroidota
Pedobacter nyackensis [FWYB]
166827
166914
+
Ser
GCT
[ENA]
¡û
>W1710733623
LGEL01000018
Bacteroidota
Pedobacter panaciterrae [LGEL]
20659
20572
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK