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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.234327 (70 seq.)
>W1711054690
LRUA01000003
Alphaproteobacteria
Kordiimonas lacus [LRUA]
727773
727697
-
Ile
GAT
[ENA]
¡û
>W1711054699
LRUA01000006
Alphaproteobacteria
Kordiimonas lacus [LRUA]
2071
2147
+
Ile
GAT
[ENA]
¡û
>W1711054721
LRUA01000007
Alphaproteobacteria
Kordiimonas lacus [LRUA]
4064
3988
-
Ile
GAT
[ENA]
¡û
>W1711054734
LRUA01000010
Alphaproteobacteria
Kordiimonas lacus [LRUA]
4064
3988
-
Ile
GAT
[ENA]
¡û
>W1711510451
MLAX01000010
Alphaproteobacteria
Alphaproteobacteria bacterium AO1-B [MLAX]
4338
4262
-
Ile
GAT
[ENA]
¡û
>W1712056267
NFZT01000001
Alphaproteobacteria
Pacificimonas flava [NFZT]
1509851
1509927
+
Ile
GAT
[ENA]
¡û
>W131215905
ATVJ01000005
Alphaproteobacteria
Ponticaulis koreensis DSM 19734 [ATVJ]
3582
3506
-
Ile
GAT
[ENA]
¡û
>C171097445
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
3188983
3189059
+
Ile
GAT
-
¡û
>C171097448
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
3313071
3313147
+
Ile
GAT
-
¡û
>C171097475
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
2469630
2469554
-
Ile
GAT
-
¡û
>WENV180212336
OBAN01010680
[OBAN] marine metagenome; ENVO 00002150
181
257
+
Ile
GAT
[ENA]
¢þ
>WENV180282441
OBIC01000004
[OBIC] beach sand metagenome; beach sand
147949
148025
+
Ile
GAT
[ENA]
¢þ
>WENV180293880
OBIY01003394
[OBIY] beach sand metagenome; beach sand
312
388
+
Ile
GAT
[ENA]
¢þ
>WENV180309497
OBJS01002792
[OBJS] beach sand metagenome; beach sand
332
408
+
Ile
GAT
[ENA]
¢þ
>WENV180357090
OBNM01018200
[OBNM] marine metagenome; none
362
286
-
Ile
GAT
[ENA]
¢þ
>WENV180379348
OBOP01020071
[OBOP] marine metagenome; water
325
249
-
Ile
GAT
[ENA]
¢þ
>WENV180393054
OBPP01062184
[OBPP] marine metagenome; ENVO:00002042
113
189
+
Ile
GAT
[ENA]
¢þ
>WENV180641687
OCRN01026612
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
442
366
-
Ile
GAT
[ENA]
¢þ
>WENV181227543
OFDN01015561
[OFDN] hot springs metagenome; Water
2345
2269
-
Ile
GAT
[ENA]
¢þ
>W141152639
AXBY01000028
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
4147
4071
-
Ile
GAT
[ENA]
¡û
>W141200756
AYYG01000011
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
53679
53603
-
Ile
GAT
[ENA]
¡û
>WENV183627338
OOGL01000613
[OOGL] marine metagenome; sea ice
3854
3778
-
Ile
GAT
[ENA]
¢þ
>WENV183730998
PJTS01003566
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
867
943
+
Ile
GAT
[ENA]
¢þ
>WENV170203105
CEPS01024591
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
363
439
+
Ile
GAT
[ENA]
¢þ
>WENV170424719
CEUP01005891
[CEUP] marine metagenome genome assembly TARA_123_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2084
2008
-
Ile
GAT
[ENA]
¢þ
>WENV170474174
CEVH01108420
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
225
149
-
Ile
GAT
[ENA]
¢þ
>WENV170727850
LULE01003121
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
1947
2023
+
Ile
GAT
[ENA]
¢þ
>WENV170737141
LULN01003490
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
376
452
+
Ile
GAT
[ENA]
¢þ
>WENV170739528
LULQ01002800
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
11
87
+
Ile
GAT
[ENA]
¢þ
>WENV170740474
LULR01012008
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
1699
1775
+
Ile
GAT
[ENA]
¢þ
>WENV170743909
LULW01008244
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
1395
1319
-
Ile
GAT
[ENA]
¢þ
>WENV170759225
LUMS01006714
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
410
486
+
Ile
GAT
[ENA]
¢þ
>WENV170779783
LZQR01000604
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
4848
4924
+
Ile
GAT
[ENA]
¢þ
>C181067706
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
4367543
4367619
+
Ile
GAT
-
¡û
>C181067727
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
3716657
3716581
-
Ile
GAT
-
¡û
>C181067730
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
3640292
3640216
-
Ile
GAT
-
¡û
>C191188382
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
1543500
1543576
+
Ile
GAT
-
¡û
>C191188417
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
860489
860413
-
Ile
GAT
-
¡û
>C191188420
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
630228
630152
-
Ile
GAT
-
¡û
>W1910285148
FREW01000004
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
231413
231337
-
Ile
GAT
[ENA]
¡û
>W1911701586
QNUM01000022
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
1939
2015
+
Ile
GAT
[ENA]
¡û
>W1810196366
PKUQ01000054
Alphaproteobacteria
Cohaesibacter celericrescens H1304 [PKUQ]
126448
126372
-
Ile
GAT
[ENA]
¡û
>W1810532681
QCYM01000043
Alphaproteobacteria
Labrenzia sp. 011 [QCYM]
3886
3810
-
Ile
GAT
[ENA]
¡û
>W1810725565
QODK01000019
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
3770
3694
-
Ile
GAT
[ENA]
¡û
>C11117244
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
493573
493649
+
Ile
GAT
[Ensembl]
¡û
>C11117247
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
633534
633610
+
Ile
GAT
[Ensembl]
¡û
>W11135852
AEFL01000047
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
15850
15926
+
Ile
GAT
[ENA]
¡û
>W11135859
AEFL01000057
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
48460
48536
+
Ile
GAT
[ENA]
¡û
>W11135863
AEFL01000058
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
3729
3653
-
Ile
GAT
[ENA]
¡û
>W11135865
AEFL01000060
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
159698
159622
-
Ile
GAT
[ENA]
¡û
>W11135873
AEFL01000070
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
128112
128036
-
Ile
GAT
[ENA]
¡û
>W11135892
AEFL01000103
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
6335
6259
-
Ile
GAT
[ENA]
¡û
>C161037900
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
722934
723010
+
Ile
GAT
-
¡û
>C161037903
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
818241
818317
+
Ile
GAT
-
¡û
>C161037946
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
1148
1072
-
Ile
GAT
-
¡û
>W1610092099
CXTY01000027
Alphaproteobacteria
Roseibium album alba [CXTY]
1460
1384
-
Ile
GAT
[ENA]
¡û
>W1610092151
CXWA01000023
Alphaproteobacteria
Roseibium album alba [CXWA]
4566
4490
-
Ile
GAT
[ENA]
¡û
>W1610092171
CXWC01000008
Alphaproteobacteria
Roseibium album alba [CXWC]
4566
4490
-
Ile
GAT
[ENA]
¡û
>W1610092240
CXWD01000047
Alphaproteobacteria
Roseibium alexandrii [CXWD]
3934
3858
-
Ile
GAT
[ENA]
¡û
>W1610540278
JSEP01000005
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
108637
108713
+
Ile
GAT
[ENA]
¡û
>W1610895736
LRUA01000003
Alphaproteobacteria
Kordiimonas lacus [LRUA]
727773
727697
-
Ile
GAT
[ENA]
¡û
>W1610895745
LRUA01000006
Alphaproteobacteria
Kordiimonas lacus [LRUA]
2071
2147
+
Ile
GAT
[ENA]
¡û
>W1610895767
LRUA01000007
Alphaproteobacteria
Kordiimonas lacus [LRUA]
4064
3988
-
Ile
GAT
[ENA]
¡û
>W1610895780
LRUA01000010
Alphaproteobacteria
Kordiimonas lacus [LRUA]
4064
3988
-
Ile
GAT
[ENA]
¡û
>W1710095456
CXTY01000027
Alphaproteobacteria
Roseibium album alba [CXTY]
1460
1384
-
Ile
GAT
[ENA]
¡û
>W1710095508
CXWA01000023
Alphaproteobacteria
Roseibium album alba [CXWA]
4566
4490
-
Ile
GAT
[ENA]
¡û
>W1710095528
CXWC01000008
Alphaproteobacteria
Roseibium album alba [CXWC]
4566
4490
-
Ile
GAT
[ENA]
¡û
>W1710095597
CXWD01000047
Alphaproteobacteria
Roseibium alexandrii [CXWD]
3934
3858
-
Ile
GAT
[ENA]
¡û
>W1710643299
JSEP01000005
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
108637
108713
+
Ile
GAT
[ENA]
¡û
>W1710660281
JXMT01000170
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
225
149
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK