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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.234621 (36 seq.)
>W1710872642
LMMD01000012
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
67834
67910
+
Met
CAT
[ENA]
¡û
>W1710874188
LMNK01000001
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
760978
760902
-
Met
CAT
[ENA]
¡û
>W1711125330
LUNF01000018
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
9711
9787
+
Met
CAT
[ENA]
¡û
>W1711125416
LUNG01000077
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
32490
32566
+
Met
CAT
[ENA]
¡û
>W1711125449
LUNH01000041
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
18547
18471
-
Met
CAT
[ENA]
¡û
>W1711125496
LUNI01000024
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
75095
75019
-
Met
CAT
[ENA]
¡û
>W131228084
AUFR01000001
Actinomycetota
Propionibacterium acidifaciens DSM 21887 [AUFR]
121950
121874
-
Met
CAT
[ENA]
¡û
>WENV180256180
OBEQ010791701
[OBEQ] groundwater metagenome; groundwater
314
238
-
fMet
CAT
[ENA]
¢þ
>WENV180261880
OBEQ011334695
[OBEQ] groundwater metagenome; groundwater
23560
23636
+
fMet
CAT
[ENA]
¢þ
>WENV180271060
OBEQ012232104
[OBEQ] groundwater metagenome; groundwater
335
411
+
fMet
CAT
[ENA]
¢þ
>WENV181165369
OEIR01777568
[OEIR] soil metagenome; soil
77
151
+
fMet
CAT
[ENA]
¢þ
>WENV181298141
OFHL01035066
[OFHL] soil metagenome; Clay
471
395
-
fMet
CAT
[ENA]
¢þ
>WENV183686393
ORMF010993727
[ORMF] groundwater metagenome; groundwater
16069
15993
-
fMet
CAT
[ENA]
¢þ
>WENV183708295
PDWI01014500
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5867
5793
-
fMet
CAT
[ENA]
¢þ
>WENV183716059
PDWI01283262
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
25
101
+
fMet
CAT
[ENA]
¢þ
>WENV183718664
PDWJ01005708
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4744
4820
+
fMet
CAT
[ENA]
¢þ
>WENV170729048
LULF01006083
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
932
856
-
Met
CAT
[ENA]
¢þ
>WENV170729653
LULG01000093
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
18547
18471
-
Met
CAT
[ENA]
¢þ
>WENV170732609
LULJ01000236
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
32490
32566
+
Met
CAT
[ENA]
¢þ
>WENV170736206
LULM01000099
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
9711
9787
+
Met
CAT
[ENA]
¢þ
>WENV170759122
LUMS01003119
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
1180
1104
-
Met
CAT
[ENA]
¢þ
>C191030101
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
1622432
1622356
-
Met
CAT
-
¡û
>C191030102
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
1622237
1622161
-
Met
CAT
-
¡û
>C191110321
CP033719
Actinomycetota
Propionibacterium acidifaciens FDAARGOS_576 [CP033719]
93645
93719
+
Met
CAT
-
¡û
>C191211205
LR134442
Actinomycetota
Propionibacterium australiense NCTC13651 [LR134442]
1320936
1320860
-
Met
CAT
-
¡û
>W1911538346
OMOH01000001
Actinomycetota
Propionibacterium ruminifibrarum JV5 [OMOH]
266123
266197
+
Met
CAT
[ENA]
¡û
>W1810626248
QHKY01000006
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
168320
168396
+
Met
CAT
[ENA]
¡û
>W1830011387
QEIM01000416
Actinomycetota
Marinitenerispora sediminis TPS83 [QEIM]
581
505
-
Met
CAT
[ENA]
¡û
>C161036382
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
1261138
1261214
+
Met
CAT
[Ensembl]
¡û
>W1610734988
LMMD01000012
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
67834
67910
+
Met
CAT
[ENA]
¡û
>W1610736534
LMNK01000001
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
760978
760902
-
Met
CAT
[ENA]
¡û
>W1610936263
LUNF01000018
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
9711
9787
+
Met
CAT
[ENA]
¡û
>W1610936349
LUNG01000077
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
32490
32566
+
Met
CAT
[ENA]
¡û
>W1610936382
LUNH01000041
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
18547
18471
-
Met
CAT
[ENA]
¡û
>W1610936429
LUNI01000024
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
75095
75019
-
Met
CAT
[ENA]
¡û
>W1710520263
FNFM01000001
Actinomycetota
Actinopolyspora mzabensis [FNFM]
513789
513863
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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