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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235140 (34 seq.)
>A171000731
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
1671452
1671527
+
Cys
GCA
-
¡û
>A171001604
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
9909
9834
-
Cys
GCA
-
¡û
>A171006683
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
195700
195776
+
Cys
GCA
-
¡û
>A171006725
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
196377
196452
+
Cys
GCA
-
¡û
>A171007256
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
1353783
1353707
-
Cys
GCA
-
¡û
>WENV180318956
OBKM01073985
[OBKM] metagenome; water
76
1
-
Cys
GCA
[ENA]
¢þ
>WENV181416621
OGCL01116410
[OGCL] hot springs metagenome; Hot spring water
513
438
-
Cys
GCA
[ENA]
¢þ
>WENV170008914
APHM01015113
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1096
1021
-
Cys
GCA
[ENA]
¢þ
>WENV170681767
LFFM01002577
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
195
270
+
Cys
GCA
[ENA]
¢þ
>WENV170703015
LKMJ01005558
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
195
270
+
Cys
GCA
[ENA]
¢þ
>W1910006649
BBJN01000010
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
162
237
+
Cys
GCA
[ENA]
¡û
>W1910006933
BBMP01000022
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
272889
272814
-
Cys
GCA
[ENA]
¡û
>W1910175092
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
1396377
1396302
-
Cys
GCA
[ENA]
¡û
>W1910227031
FNHL01000004
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
437085
437010
-
Cys
GCA
[ENA]
¡û
>W1910229774
FODV01000008
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
146366
146291
-
Cys
GCA
[ENA]
¡û
>W1910230465
FOTC01000001
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
525
600
+
Cys
GCA
[ENA]
¡û
>W1911709183
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
1322416
1322340
-
Cys
GCA
[ENA]
¡û
>W1911709988
QPND01000009
Euryarchaeota
Saliphagus sp. LR7 [QPND]
34031
33955
-
Cys
GCA
[ENA]
¡û
>W1911824366
QZWE01000032
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
15621
15546
-
Cys
GCA
[ENA]
¡û
>W1610000841
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
2402839
2402914
+
Cys
GCA
[ENA]
¡û
>W1610003253
AFNT02000002
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
68304
68382
+
Cys
GCA
[ENA]
¡û
>W1610005332
AJRK01000365
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
5645
5720
+
Cys
GCA
[ENA]
¡û
>W1610005909
ALJD01000009
Euryarchaeota
Halogranum salarium B-1 [ALJD]
588082
588007
-
Cys
GCA
[ENA]
¡û
>W1610011883
AOHV01000046
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
36898
36973
+
Cys
GCA
[ENA]
¡û
>W1610014496
AOMB01000011
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
48626
48701
+
Cys
GCA
[ENA]
¡û
>W1610014539
AOMC01000054
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
66655
66733
+
Cys
GCA
[ENA]
¡û
>W1610014597
AOMD01000030
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
122393
122468
+
Cys
GCA
[ENA]
¡û
>W1610014639
AOME01000075
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
33314
33389
+
Cys
GCA
[ENA]
¡û
>W1610014678
AOMF01000156
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
2055
2133
+
Cys
GCA
[ENA]
¡û
>W1610024345
ATYM01000001
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
169
245
+
Cys
GCA
[ENA]
¡û
>W1610029959
AXZD01000013
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
10425
10350
-
Cys
GCA
[ENA]
¡û
>W1610040549
BAFM01000010
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
110753
110828
+
Cys
GCA
[ENA]
¡û
>W1610617546
LGUC01000001
Euryarchaeota
Halolamina pelagica CDK2 [LGUC]
481325
481401
+
Cys
GCA
[ENA]
¡û
>W1610925034
LTAZ01000003
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
279465
279540
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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