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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235235 (132 seq.)
>W1710809882
LKFB01000038
Betaproteobacteria
Comamonas thiooxydans [LKFB]
22277
22201
-
Gln
TTG
[ENA]
¡û
>W1710870511
LMKO01000022
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
140861
140937
+
Gln
TTG
[ENA]
¡û
>W1710886002
LMXT01000008
Betaproteobacteria
Comamonas testosteroni [LMXT]
44833
44757
-
Gln
TTG
[ENA]
¡û
>W1710934447
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
133552
133628
+
Gln
TTG
[ENA]
¡û
>W1710934484
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
36833
36909
+
Gln
TTG
[ENA]
¡û
>W1711033427
LRHW01000086
Betaproteobacteria
Janthinobacterium lividum [LRHW]
65903
65979
+
Gln
TTG
[ENA]
¡û
>W1711033517
LRHY01000056
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
116070
115994
-
Gln
TTG
[ENA]
¡û
>W1711033587
LRHZ01000012
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
116286
116210
-
Gln
TTG
[ENA]
¡û
>W1711033652
LRIA01000075
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
116075
115999
-
Gln
TTG
[ENA]
¡û
>W1711033787
LRIC01000073
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
66050
66126
+
Gln
TTG
[ENA]
¡û
>W1711033826
LRID01000082
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
66521
66597
+
Gln
TTG
[ENA]
¡û
>W1711149075
LVLD01000019
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
687911
687987
+
Gln
TTG
[ENA]
¡û
>W1711149145
LVLF01000013
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
809037
809113
+
Gln
TTG
[ENA]
¡û
>W1711272435
LZFI01000003
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
123826
123750
-
Gln
TTG
[ENA]
¡û
>W1711281976
LZMQ01000001
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
141811
141735
-
Gln
TTG
[ENA]
¡û
>W1711282047
LZMR01000007
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
250705
250781
+
Gln
TTG
[ENA]
¡û
>W1711301912
MAIK01000361
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
329
405
+
Gln
TTG
[ENA]
¡û
>W1711308600
MAQB02000001
Betaproteobacteria
Janthinobacterium lividum [MAQB]
1426937
1426861
-
Gln
TTG
[ENA]
¡û
>W1711583965
MNXW01000276
Betaproteobacteria
Comamonadaceae bacterium CG2_30_57_122 [MNXW]
18082
18006
-
Gln
TTG
[ENA]
¡û
>W1711625780
MPIY01000003
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
250880
250804
-
Gln
TTG
[ENA]
¡û
>W1711721710
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
4158227
4158303
+
Gln
TTG
[ENA]
¡û
>W1711932786
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
220104
220180
+
Gln
TTG
[ENA]
¡û
>W1712004545
NEGY01000020
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
33393
33317
-
Gln
TTG
[ENA]
¡û
>W1712004599
NEGZ01000016
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
28247
28323
+
Gln
TTG
[ENA]
¡û
>W1712004678
NEHA01000014
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
33382
33306
-
Gln
TTG
[ENA]
¡û
>W1712004770
NEHB01000010
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
89789
89713
-
Gln
TTG
[ENA]
¡û
>W1712077007
NGUO01000002
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
90464
90540
+
Gln
TTG
[ENA]
¡û
>W1712077024
NGUO01000008
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
77947
78023
+
Gln
TTG
[ENA]
¡û
>C171010511
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
5686566
5686490
-
Gln
TTG
-
¡û
>C171035196
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
2069528
2069604
+
Gln
TTG
-
¡û
>C171094215
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
73674
73750
+
Gln
CTG
-
¡û
>W131106728
APFF01000033
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
178916
178840
-
Gln
TTG
[ENA]
¡û
>w019661
AAUJ01000001
Betaproteobacteria
Comamonas testosteroni KF-1 [AAUJ]
230739
230661
-
Gln
TTG
[ENA]
¡û
>WENV180022327
FTFY01000871
[FTFY] metagenome; soil
37457
37381
-
Gln
TTG
[ENA]
¢þ
>WENV180026550
FTIU01002197
[FTIU] metagenome; soil
3225
3301
+
Gln
TTG
[ENA]
¢þ
>WENV016789
AACY020469994
Marine microbial communities from Global Ocean Sampling (GOS)
1733
1811
+
Gln
TTG
[ENA]
>WENV180261705
OBEQ011318820
[OBEQ] groundwater metagenome; groundwater
784
708
-
Gln
TTG
[ENA]
¢þ
>WENV180304583
OBJI01148980
[OBJI] soil metagenome; soil
88
12
-
Gln
TTG
[ENA]
¢þ
>WENV180972166
ODUU01271933
[ODUU] human metagenome; G_DNA_Stool
200
124
-
Gln
CTG
[ENA]
¢þ
>WENV181149344
OEHT01053561
[OEHT] human metagenome; G_DNA_Stool
18
94
+
Gln
CTG
[ENA]
¢þ
>WENV181368990
OFQN01007671
[OFQN] freshwater metagenome; Freshwater Lake
417
493
+
Gln
TTG
[ENA]
¢þ
>WENV181384146
OFRH01024028
[OFRH] wastewater metagenome; Exp Tend NO 100WW
466
542
+
Gln
TTG
[ENA]
¢þ
>WENV181884092
OGXI01039200
[OGXI] human gut metagenome; faeces
183
107
-
Gln
CTG
[ENA]
¢þ
>WENV181929424
OGYO01023594
[OGYO] human gut metagenome; faeces
1485
1561
+
Gln
CTG
[ENA]
¢þ
>W141238277
BBJZ01000042
Betaproteobacteria
Comamonas testosteroni [BBJZ]
458
382
-
Gln
TTG
[ENA]
¡û
>C08007624
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
1427557
1427633
+
Gln
TTG
[Ensembl]
¡û
>WENV183330729
OLWB01019380
[OLWB] human gut metagenome; faeces
1316
1392
+
Gln
CTG
[ENA]
¢þ
>WENV183730168
PJTR01001781
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
1130
1206
+
Gln
TTG
[ENA]
¢þ
>WENV183730950
PJTS01002505
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1342
1266
-
Gln
TTG
[ENA]
¢þ
>WENV170559880
CXWL01165329
[CXWL] groundwater metagenome; biofilm material
666
742
+
Gln
TTG
[ENA]
¢þ
>WENV170639621
JFJP01005409
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
11548
11472
-
Gln
TTG
[ENA]
¢þ
>W141484455
JFYR01000012
Betaproteobacteria
Janthinobacterium lividum [JFYR]
582798
582874
+
Gln
TTG
[ENA]
¡û
>C181081099
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
817606
817682
+
Gln
TTG
-
¡û
>C181187680
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1470542
1470618
+
Gln
TTG
-
¡û
>C181218881
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
1641548
1641624
+
Gln
TTG
-
¡û
>C181218914
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
1404638
1404714
+
Gln
TTG
-
¡û
>C181218946
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
1518275
1518351
+
Gln
TTG
-
¡û
>C181218985
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
1372906
1372982
+
Gln
TTG
-
¡û
>C181219037
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
175675
175599
-
Gln
TTG
-
¡û
>C181219044
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
513272
513348
+
Gln
TTG
-
¡û
>C181219090
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
1370540
1370616
+
Gln
TTG
-
¡û
>C191188142
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
4679292
4679368
+
Gln
TTG
-
¡û
>W09119270
ACDQ01000017
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
76710
76634
-
Gln
CTG
[ENA]
¡û
>W141821514
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
4826572
4826648
+
Gln
TTG
[ENA]
¡û
>C141003805
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
1871542
1871618
+
Gln
TTG
[Ensembl]
¡û
>C141003905
CP004885
Betaproteobacteria
Candidatus Symbiobacter mobilis CR [CP004885]
1275114
1275037
-
Gln
TTG
[Ensembl]
¡û
>W1911490731
OANS01000001
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
130634
130558
-
Gln
TTG
[ENA]
¡û
>W1911572389
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
3113905
3113829
-
Gln
TTG
[ENA]
¡û
>W1810068178
PDZI01000008
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
221940
221864
-
Gln
TTG
[ENA]
¡û
>W1810068283
PDZJ01000005
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
66188
66264
+
Gln
TTG
[ENA]
¡û
>W1810068482
PDZM01000003
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
404020
404096
+
Gln
TTG
[ENA]
¡û
>W1810068562
PDZN01000006
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
152781
152705
-
Gln
TTG
[ENA]
¡û
>W1810068674
PDZO02000020
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
32331
32255
-
Gln
TTG
[ENA]
¡û
>W1810069752
PEBS01000015
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
29986
29910
-
Gln
TTG
[ENA]
¡û
>W1810071318
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
2585859
2585783
-
Gln
TTG
[ENA]
¡û
>W1810072815
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
2131309
2131233
-
Gln
TTG
[ENA]
¡û
>W1810089389
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
4642456
4642532
+
Gln
TTG
[ENA]
¡û
>W1810102007
PGTX01000003
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
254082
254158
+
Gln
TTG
[ENA]
¡û
>W1810172810
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
4882424
4882500
+
Gln
TTG
[ENA]
¡û
>W1810576760
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
834573
834649
+
Gln
TTG
[ENA]
¡û
>W1810672015
QJTC01000003
Betaproteobacteria
Xylophilus ampelinus CECT 7646 [QJTC]
68861
68785
-
Gln
TTG
[ENA]
¡û
>W1810699133
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
216354
216430
+
Gln
TTG
[ENA]
¡û
>W1810762952
QQAS01000017
Betaproteobacteria
Comamonas sp. AG1104 [QQAS]
28577
28501
-
Gln
TTG
[ENA]
¡û
>C151025659
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
1879689
1879765
+
Gln
TTG
[Ensembl]
¡û
>C151062627
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
751519
751443
-
Gln
TTG
[Ensembl]
¡û
>C151100178
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
5257211
5257135
-
Gln
TTG
[Ensembl]
¡û
>W1510015232
BBQP01000046
Betaproteobacteria
Comamonas testosteroni KF712 [BBQP]
5938
6014
+
Gln
TTG
[ENA]
¡û
>W1510019204
BBVD01000018
Betaproteobacteria
Comamonas thiooxydans DSM 17888 [BBVD]
78068
77992
-
Gln
TTG
[ENA]
¡û
>W10119382
ADVQ01000030
Betaproteobacteria
Comamonas thiooxydans S44 [ADVQ]
8608
8684
+
Gln
TTG
[ENA]
¡û
>W1511204452
JMRS01000002
Betaproteobacteria
Comamonas testosteroni I2 [JMRS]
100630
100554
-
Gln
TTG
[ENA]
¡û
>W1511204510
JMRS01000042
Betaproteobacteria
Comamonas testosteroni I2 [JMRS]
6034
6110
+
Gln
TTG
[ENA]
¡û
>W1511355675
JRRH01000004
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
65946
66022
+
Gln
TTG
[ENA]
¡û
>W11125602
ADVQ01000030
Betaproteobacteria
Comamonas thiooxydans S44 [ADVQ]
8608
8684
+
Gln
TTG
[ENA]
¡û
>W1511584191
LAVC01000037
Betaproteobacteria
Comamonas thiooxydans KY3 [LAVC]
9156
9232
+
Gln
TTG
[ENA]
¡û
>W1511588733
LBCO01000002
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
68872
68948
+
Gln
TTG
[ENA]
¡û
>C161053621
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
927970
927894
-
Gln
TTG
[Ensembl]
¡û
>C161053716
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
741366
741290
-
Gln
TTG
[Ensembl]
¡û
>C161053814
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
679471
679395
-
Gln
TTG
[Ensembl]
¡û
>WENV058274
AACY023323192
Marine microbial communities from Global Ocean Sampling (GOS)
1276
1354
+
Gln
TTG
[ENA]
>WENV058843
AACY023344181
Marine microbial communities from Global Ocean Sampling (GOS)
385
463
+
Gln
TTG
[ENA]
>WENV058871
AACY023345230
Marine microbial communities from Global Ocean Sampling (GOS)
1070
1148
+
Gln
TTG
[ENA]
>W121033103
AHIL01000005
Betaproteobacteria
Comamonas testosteroni ATCC 11996 [AHIL]
9385
9461
+
Gln
TTG
[ENA]
¡û
>W121123562
BAEC01000002
Betaproteobacteria
Comamonas testosteroni NBRC 100989 [BAEC]
74679
74755
+
Gln
TTG
[ENA]
¡û
>W121123600
BAEC01000090
Betaproteobacteria
Comamonas testosteroni NBRC 100989 [BAEC]
65465
65541
+
Gln
TTG
[ENA]
¡û
>W121031797
AHHB01000016
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
52990
53066
+
Gln
TTG
[ENA]
¡û
>W1610028443
AWOR01000052
Betaproteobacteria
Comamonas testosteroni [AWOR]
59682
59606
-
Gln
TTG
[ENA]
¡û
>W1610028519
AWOS01000072
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOS]
10895
10819
-
Gln
TTG
[ENA]
¡û
>W1610028630
AWOU01000037
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOU]
10901
10825
-
Gln
TTG
[ENA]
¡û
>W1610028688
AWOV01000037
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
10901
10825
-
Gln
TTG
[ENA]
¡û
>W1610028893
AWTN01000120
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
100
24
-
Gln
TTG
[ENA]
¡û
>W1610029037
AWTP01000154
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
1338
1262
-
Gln
TTG
[ENA]
¡û
>W1610029084
AWTQ01000029
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTQ]
13935
13859
-
Gln
TTG
[ENA]
¡û
>W1610673937
LKFB01000038
Betaproteobacteria
Comamonas thiooxydans [LKFB]
22277
22201
-
Gln
TTG
[ENA]
¡û
>W1610732857
LMKO01000022
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
140861
140937
+
Gln
TTG
[ENA]
¡û
>W1610747928
LMXT01000008
Betaproteobacteria
Comamonas testosteroni [LMXT]
44833
44757
-
Gln
TTG
[ENA]
¡û
>W1610791978
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
133552
133628
+
Gln
TTG
[ENA]
¡û
>W1610792015
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
36833
36909
+
Gln
TTG
[ENA]
¡û
>W1611052752
MAIK01000361
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
329
405
+
Gln
TTG
[ENA]
¡û
>W1611056267
MAQB01000056
Betaproteobacteria
Janthinobacterium lividum [MAQB]
123416
123340
-
Gln
TTG
[ENA]
¡û
>W1710024345
AWOR01000052
Betaproteobacteria
Comamonas testosteroni [AWOR]
59682
59606
-
Gln
TTG
[ENA]
¡û
>W1710024421
AWOS01000072
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOS]
10895
10819
-
Gln
TTG
[ENA]
¡û
>W1710024532
AWOU01000037
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOU]
10901
10825
-
Gln
TTG
[ENA]
¡û
>W1710024590
AWOV01000037
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
10901
10825
-
Gln
TTG
[ENA]
¡û
>W1710026263
AWTN01000120
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
100
24
-
Gln
TTG
[ENA]
¡û
>W1710026407
AWTP01000154
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
1338
1262
-
Gln
TTG
[ENA]
¡û
>W1710026454
AWTQ01000029
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTQ]
13935
13859
-
Gln
TTG
[ENA]
¡û
>W1710517048
FNDA01000003
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
233786
233710
-
Gln
TTG
[ENA]
¡û
>W1710556781
FOKL01000011
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
65442
65518
+
Gln
TTG
[ENA]
¡û
>W1710557530
FOLC01000004
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
208816
208740
-
Gln
TTG
[ENA]
¡û
>W1710564215
FOQI01000005
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
234874
234798
-
Gln
TTG
[ENA]
¡û
>W1710581741
FPKH01000013
Betaproteobacteria
Janthinobacterium lividum [FPKH]
66183
66259
+
Gln
TTG
[ENA]
¡û
>W1710596836
FTMV01000001
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
566544
566620
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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