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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235310 (60 seq.)
>W141240634
CAGP01000142
Campylobacterota
Helicobacter bizzozeronii CCUG 35545 [CAGP]
9546
9471
-
Glu
TTC
[ENA]
¡û
>W1910225568
FMSQ01000024
Campylobacterota
Helicobacter suis HS1 [FMSQ]
6614
6689
+
Glu
TTC
[ENA]
¡û
>W1910225607
FMSR01000033
Campylobacterota
Helicobacter suis HS1 [FMSR]
6613
6688
+
Glu
TTC
[ENA]
¡û
>W1910225628
FMSS01000029
Campylobacterota
Helicobacter suis HS1 [FMSS]
2823
2898
+
Glu
TTC
[ENA]
¡û
>W1910225665
FMST01000006
Campylobacterota
Helicobacter suis HS1 [FMST]
37267
37192
-
Glu
TTC
[ENA]
¡û
>W1910225724
FMSU01000062
Campylobacterota
Helicobacter suis HS1 [FMSU]
6611
6686
+
Glu
TTC
[ENA]
¡û
>W1910531974
FZEH01000023
Campylobacterota
Helicobacter bizzozeronii [FZEH]
5815
5890
+
Glu
TTC
[ENA]
¡û
>W1910544229
FZKH01000023
Campylobacterota
Helicobacter suis [FZKH]
37253
37178
-
Glu
TTC
[ENA]
¡û
>W1910544287
FZKI01000049
Campylobacterota
Helicobacter suis [FZKI]
6611
6686
+
Glu
TTC
[ENA]
¡û
>W1910544295
FZKJ01000007
Campylobacterota
Helicobacter suis [FZKJ]
31532
31457
-
Glu
TTC
[ENA]
¡û
>W1910544384
FZKL01000027
Campylobacterota
Helicobacter felis [FZKL]
45049
44974
-
Glu
TTC
[ENA]
¡û
>W1910544463
FZKN01000051
Campylobacterota
Helicobacter suis [FZKN]
6613
6688
+
Glu
TTC
[ENA]
¡û
>W1910544486
FZKO01000051
Campylobacterota
Helicobacter bizzozeronii [FZKO]
12316
12241
-
Glu
TTC
[ENA]
¡û
>W1910544604
FZKR01000203
Campylobacterota
Helicobacter bizzozeronii [FZKR]
5403
5478
+
Glu
TTC
[ENA]
¡û
>W1910544625
FZKS01000018
Campylobacterota
Helicobacter felis [FZKS]
98162
98237
+
Glu
TTC
[ENA]
¡û
>W1910544661
FZKT01000018
Campylobacterota
Helicobacter suis [FZKT]
6615
6690
+
Glu
TTC
[ENA]
¡û
>W1910544697
FZKU01000019
Campylobacterota
Helicobacter felis [FZKU]
62368
62443
+
Glu
TTC
[ENA]
¡û
>W1910544735
FZKV01000026
Campylobacterota
Helicobacter suis [FZKV]
6691
6766
+
Glu
TTC
[ENA]
¡û
>W1910544871
FZKZ01000014
Campylobacterota
Helicobacter felis [FZKZ]
98213
98288
+
Glu
TTC
[ENA]
¡û
>W1910544956
FZLB01000098
Campylobacterota
Helicobacter bizzozeronii [FZLB]
8708
8783
+
Glu
TTC
[ENA]
¡û
>W1910544976
FZLC01000006
Campylobacterota
Helicobacter felis [FZLC]
39256
39181
-
Glu
TTC
[ENA]
¡û
>W1910545013
FZLD01000025
Campylobacterota
Helicobacter suis [FZLD]
17908
17833
-
Glu
TTC
[ENA]
¡û
>W1910545048
FZLE01000037
Campylobacterota
Helicobacter suis [FZLE]
6605
6680
+
Glu
TTC
[ENA]
¡û
>W1910545192
FZLI01000010
Campylobacterota
Helicobacter suis [FZLI]
37280
37205
-
Glu
TTC
[ENA]
¡û
>W1910545235
FZLJ01000057
Campylobacterota
Helicobacter bizzozeronii [FZLJ]
623
548
-
Glu
TTC
[ENA]
¡û
>W1910545274
FZLK01000117
Campylobacterota
Helicobacter bizzozeronii [FZLK]
8685
8760
+
Glu
TTC
[ENA]
¡û
>W1910545645
FZLU01000021
Campylobacterota
Helicobacter ailurogastricus [FZLU]
11669
11594
-
Glu
TTC
[ENA]
¡û
>W1910545796
FZLY01000045
Campylobacterota
Helicobacter salomonis [FZLY]
7500
7575
+
Glu
TTC
[ENA]
¡û
>W1910545829
FZLZ01000055
Campylobacterota
Helicobacter salomonis [FZLZ]
8595
8520
-
Glu
TTC
[ENA]
¡û
>W1910545853
FZMA01000011
Campylobacterota
Helicobacter salomonis [FZMA]
7612
7687
+
Glu
TTC
[ENA]
¡û
>W1910545902
FZMB01000064
Campylobacterota
Helicobacter salomonis [FZMB]
7327
7252
-
Glu
TTC
[ENA]
¡û
>W1910545998
FZME01000028
Campylobacterota
Helicobacter heilmannii [FZME]
25625
25700
+
Glu
TTC
[ENA]
¡û
>W1910546018
FZMF01000008
Campylobacterota
Helicobacter baculiformis [FZMF]
26636
26711
+
Glu
TTC
[ENA]
¡û
>W1910546062
FZMG01000030
Campylobacterota
Helicobacter heilmannii [FZMG]
24492
24417
-
Glu
TTC
[ENA]
¡û
>W1910546087
FZMH01000009
Campylobacterota
Helicobacter ailurogastricus [FZMH]
9861
9936
+
Glu
TTC
[ENA]
¡û
>W1910546217
FZMK01000124
Campylobacterota
Helicobacter bizzozeronii [FZMK]
635
560
-
Glu
TTC
[ENA]
¡û
>W1910546415
FZMQ01000005
Campylobacterota
Helicobacter cynogastricus [FZMQ]
464628
464703
+
Glu
TTC
[ENA]
¡û
>W1910546718
FZMY01000117
Campylobacterota
Helicobacter bizzozeronii [FZMY]
8710
8785
+
Glu
TTC
[ENA]
¡û
>W1910756185
MLAP01000010
Campylobacterota
Helicobacter sp. 12S02634-8 [MLAP]
6548
6623
+
Glu
TTC
[ENA]
¡û
>W1910756286
MLAS01000014
Campylobacterota
Helicobacter sp. 13S00477-4 [MLAS]
26151
26226
+
Glu
TTC
[ENA]
¡û
>W1911490676
OANQ01000039
Campylobacterota
Helicobacter salomonis [OANQ]
7312
7237
-
Glu
TTC
[ENA]
¡û
>W1911779811
QXQP01000018
Campylobacterota
Helicobacter mehlei L15 [QXQP]
8359
8434
+
Glu
TTC
[ENA]
¡û
>W1911779917
QXQS01000018
Campylobacterota
Helicobacter mehlei L4 [QXQS]
14139
14064
-
Glu
TTC
[ENA]
¡û
>W1911779949
QXQT01000018
Campylobacterota
Helicobacter vulpis L2 [QXQT]
5566
5491
-
Glu
TTC
[ENA]
¡û
>W1510073733
CDMG01000009
Campylobacterota
Helicobacter ailurogastricus [CDMG]
408425
408350
-
Glu
TTC
[ENA]
¡û
>W1510073742
CDMH01000006
Campylobacterota
Helicobacter ailurogastricus [CDMH]
9795
9870
+
Glu
TTC
[ENA]
¡û
>W1510073804
CDMI01000062
Campylobacterota
Helicobacter heilmannii [CDMI]
39282
39357
+
Glu
TTC
[ENA]
¡û
>W1510073811
CDMJ01000032
Campylobacterota
Helicobacter heilmannii [CDMJ]
28021
28096
+
Glu
TTC
[ENA]
¡û
>W1510073849
CDMK01000001
Campylobacterota
Helicobacter heilmannii [CDMK]
804485
804410
-
Glu
TTC
[ENA]
¡û
>W1510073885
CDML01000009
Campylobacterota
Helicobacter ailurogastricus [CDML]
9795
9870
+
Glu
TTC
[ENA]
¡û
>W1510073912
CDMM01000010
Campylobacterota
Helicobacter heilmannii [CDMM]
56199
56274
+
Glu
TTC
[ENA]
¡û
>W1510073970
CDMN01000056
Campylobacterota
Helicobacter ailurogastricus [CDMN]
11737
11662
-
Glu
TTC
[ENA]
¡û
>W1510074055
CDMP01000057
Campylobacterota
Helicobacter heilmannii [CDMP]
11754
11679
-
Glu
TTC
[ENA]
¡û
>C11110165
FQ670179
Campylobacterota
Helicobacter felis ATCC 49179 [FQ670179]
305395
305320
-
Glu
TTC
[Ensembl]
¡û
>W11117570
ADGY01000091
Campylobacterota
Helicobacter suis HS1 [ADGY]
37248
37173
-
Glu
TTC
[ENA]
¡û
>W11117901
ADHO01000124
Campylobacterota
Helicobacter suis HS5 [ADHO]
13533
13458
-
Glu
TTC
[ENA]
¡û
>C121017529
FR871757
Campylobacterota
Helicobacter bizzozeronii CIII-1 [FR871757]
880677
880602
-
Glu
TTC
[Ensembl]
¡û
>C161105047
HE984298
Campylobacterota
Helicobacter heilmannii ASB1.4 type strain:ASB1.4 [HE984298]
702894
702819
-
Glu
TTC
-
¡û
>W1610077996
BDAO01000009
Campylobacterota
Helicobacter suis [BDAO]
37330
37255
-
Glu
TTC
[ENA]
¡û
>W1710076555
BDAO01000009
Campylobacterota
Helicobacter suis [BDAO]
37330
37255
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK