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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235314 (65 seq.)
>W1712096148
NHZE01000038
Gammaproteobacteria
Pantoea sp. VS1 [NHZE]
50606
50681
+
Thr
CGT
[ENA]
¡û
>WENV012951
AACY020354442
Marine microbial communities from Global Ocean Sampling (GOS)
897
972
+
Thr
CGT
[ENA]
>WENV180006349
FLRY01015795
[FLRY] metagenome; saliva
79
4
-
Thr
CGT
[ENA]
¢þ
>W141111649
AVSS01000009
Gammaproteobacteria
Pantoea dispersa EGD-AAK13 [AVSS]
52496
52421
-
Thr
CGT
[ENA]
¡û
>WENV181191351
OEPS010062958
[OEPS] soil metagenome; soil
7
82
+
Thr
CGT
[ENA]
¢þ
>WENV181731475
OGQD01001012
[OGQD] human gut metagenome; faeces
18812
18887
+
Thr
CGT
[ENA]
¢þ
>W141234136
BAWK01000028
Gammaproteobacteria
Aeromonas taiwanensis [BAWK]
78390
78315
-
Thr
CGT
[ENA]
¡û
>WENV170001555
AGFS01084910
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
281
356
+
Thr
CGT
[ENA]
¢þ
>WENV170779647
LZQQ01000839
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
2896
2821
-
Thr
CGT
[ENA]
¢þ
>C183003128
CP028349
Gammaproteobacteria
Pantoea vagans PV989 [CP028349]
1380917
1380992
+
Thr
CGT
-
¡û
>C193002742
CP038853
Gammaproteobacteria
Pantoea vagans LMG 24199 [CP038853]
3163555
3163480
-
Thr
CGT
-
¡û
>W143019330
JQNO01000001
Gammaproteobacteria
Pantoea sp. 9140 [JQNO]
580433
580508
+
Thr
CGT
[ENA]
¡û
>W1911219270
NRSO01000001
Gammaproteobacteria
Pantoea vagans TYU1 [NRSO]
3894037
3893962
-
Thr
CGT
[ENA]
¡û
>W1911420260
NXBP01000019
Gammaproteobacteria
Aeromonas caviae ZJ66-1 [NXBP]
68318
68393
+
Thr
CGT
[ENA]
¡û
>W1911705621
QORJ01000009
Gammaproteobacteria
Aeromonas taiwanensis 186 [QORJ]
128686
128761
+
Thr
CGT
[ENA]
¡û
>W1911705712
QORK01000008
Gammaproteobacteria
Aeromonas taiwanensis 198 [QORK]
10524
10449
-
Thr
CGT
[ENA]
¡û
>W1911705798
QORL01000008
Gammaproteobacteria
Aeromonas taiwanensis 1713 [QORL]
10524
10449
-
Thr
CGT
[ENA]
¡û
>W1810226460
POWM01000001
Gammaproteobacteria
Pantoea sp. ICBG 985 [POWM]
49232
49307
+
Thr
CGT
[ENA]
¡û
>W1810226581
POWN01000007
Gammaproteobacteria
Pantoea sp. ICBG 828 [POWN]
243913
243838
-
Thr
CGT
[ENA]
¡û
>W1810629130
QICZ01000001
Gammaproteobacteria
Pantoea sp. JKS000250 [QICZ]
3140684
3140759
+
Thr
CGT
[ENA]
¡û
>W1830010242
QBJB02000016
Gammaproteobacteria
Pantoea sp. RIT 413 [QBJB]
15478
15403
-
Thr
CGT
[ENA]
¡û
>C151000993
AP012551
Gammaproteobacteria
Plautia stali symbiont [AP012551]
3775312
3775387
+
Thr
CGT
[Ensembl]
¡û
>C151026009
CP007509
Gammaproteobacteria
Stutzerimonas stutzeri 19SMN4 [CP007509]
3179343
3179268
-
Thr
CGT
[Ensembl]
¡û
>C151026071
CP007511
Gammaproteobacteria
Stutzerimonas balearica DSM 6083 [CP007511]
2850265
2850190
-
Thr
CGT
[Ensembl]
¡û
>C151028250
CP007567
Gammaproteobacteria
Aeromonas media WS [CP007567]
2659182
2659257
+
Thr
CGT
[Ensembl]
¡û
>W1530021950
JPKP01000001
Gammaproteobacteria
Pantoea vagans MP7 [JPKP]
475186
475261
+
Thr
CGT
[ENA]
¡û
>W1510066045
CDBY01000007
Gammaproteobacteria
Aeromonas simiae CIP 107798 [CDBY]
23042
22967
-
Thr
CGT
[ENA]
¡û
>W1510066316
CDCB01000001
Gammaproteobacteria
Aeromonas allosaccharophila BVH88 [CDCB]
57837
57912
+
Thr
CGT
[ENA]
¡û
>W1510067714
CDDD01000049
Gammaproteobacteria
Aeromonas taiwanensis LMG 24683 [CDDD]
9497
9422
-
Thr
CGT
[ENA]
¡û
>W1510067839
CDDE01000024
Gammaproteobacteria
Aeromonas enteropelogenes CECT 4255T [CDDE]
130063
129988
-
Thr
CGT
[ENA]
¡û
>W1510067870
CDDF01000005
Gammaproteobacteria
Aeromonas eucrenophila CECT 4224 [CDDF]
478011
477936
-
Thr
CGT
[ENA]
¡û
>C11300437
CP002206
Gammaproteobacteria
Pantoea vagans C9-1 [CP002206]
316665
316740
+
Thr
CGT
[Ensembl]
¡û
>WENV11101627
AGFS01084910
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
281
356
+
Thr
CGT
[ENA]
¡û
>W1511345384
JRGK01000058
Gammaproteobacteria
Aeromonas finlandensis 4287D [JRGK]
1688
1763
+
Thr
CGT
[ENA]
¡û
>W1511358069
JRWS01000079
Gammaproteobacteria
Aeromonas hydrophila M013 [JRWS]
15002
15077
+
Thr
CGT
[ENA]
¡û
>W1511395003
JTBH01000001
Gammaproteobacteria
Aeromonas caviae FDAARGOS_75 [JTBH]
2410123
2410048
-
Thr
CGT
[ENA]
¡û
>W1511657011
LEKX01004802
Gammaproteobacteria
Pantoea dispersa SUBG008 [LEKX]
162
237
+
Thr
CGT
[ENA]
¡û
>W11184516
BABY01000096
Gammaproteobacteria
Plautia stali symbiont [BABY]
6453
6528
+
Thr
CGT
[ENA]
¡û
>C161050690
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
2849600
2849675
+
Thr
CGT
[Ensembl]
¡û
>W1610053058
BBNZ01000064
Gammaproteobacteria
Plautia stali symbiont [BBNZ]
6456
6531
+
Thr
CGT
[ENA]
¡û
>W1610053129
BBOB01000025
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
48856
48931
+
Thr
CGT
[ENA]
¡û
>W121111902
ALJZ01001221
Gammaproteobacteria
Aeromonas media WS [ALJZ]
5739
5814
+
Thr
CGT
[ENA]
¡û
>W1610591075
LDRY01000002
Gammaproteobacteria
Pantoea dispersa [LDRY]
47868
47943
+
Thr
CGT
[ENA]
¡û
>W1610591150
LDRZ01000006
Gammaproteobacteria
Pantoea dispersa [LDRZ]
515514
515439
-
Thr
CGT
[ENA]
¡û
>W1610591231
LDSA01000017
Gammaproteobacteria
Pantoea dispersa [LDSA]
48876
48951
+
Thr
CGT
[ENA]
¡û
>W1610591323
LDSB01000034
Gammaproteobacteria
Pantoea dispersa [LDSB]
48876
48951
+
Thr
CGT
[ENA]
¡û
>W1610591329
LDSC01000001
Gammaproteobacteria
Pantoea dispersa [LDSC]
47868
47943
+
Thr
CGT
[ENA]
¡û
>W1610591451
LDSD01000028
Gammaproteobacteria
Pantoea dispersa [LDSD]
1958
1883
-
Thr
CGT
[ENA]
¡û
>W1610591465
LDSE01000005
Gammaproteobacteria
Pantoea dispersa [LDSE]
48332
48407
+
Thr
CGT
[ENA]
¡û
>W1610591589
LDSF01000050
Gammaproteobacteria
Pantoea dispersa [LDSF]
48468
48543
+
Thr
CGT
[ENA]
¡û
>W1610591644
LDSG01000021
Gammaproteobacteria
Pantoea dispersa [LDSG]
228
153
-
Thr
CGT
[ENA]
¡û
>W1610922489
LSVE01000012
Gammaproteobacteria
Stutzerimonas stutzeri [LSVE]
72893
72968
+
Thr
CGT
[ENA]
¡û
>W1630008077
FKKH01000001
Gammaproteobacteria
Pantoea sp. 9133 [FKKH]
236717
236642
-
Thr
CGT
[ENA]
¡û
>W1710049436
BBNZ01000064
Gammaproteobacteria
Plautia stali symbiont [BBNZ]
6456
6531
+
Thr
CGT
[ENA]
¡û
>W1710049507
BBOB01000025
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
48856
48931
+
Thr
CGT
[ENA]
¡û
>W1710522929
FNHO01000002
Gammaproteobacteria
Stutzerimonas balearica DSM 6083 [FNHO]
119625
119550
-
Thr
CGT
[ENA]
¡û
>W1710710355
LDRY01000002
Gammaproteobacteria
Pantoea dispersa [LDRY]
47868
47943
+
Thr
CGT
[ENA]
¡û
>W1710710430
LDRZ01000006
Gammaproteobacteria
Pantoea dispersa [LDRZ]
515514
515439
-
Thr
CGT
[ENA]
¡û
>W1710710511
LDSA01000017
Gammaproteobacteria
Pantoea dispersa [LDSA]
48876
48951
+
Thr
CGT
[ENA]
¡û
>W1710710603
LDSB01000034
Gammaproteobacteria
Pantoea dispersa [LDSB]
48876
48951
+
Thr
CGT
[ENA]
¡û
>W1710710609
LDSC01000001
Gammaproteobacteria
Pantoea dispersa [LDSC]
47868
47943
+
Thr
CGT
[ENA]
¡û
>W1710710731
LDSD01000028
Gammaproteobacteria
Pantoea dispersa [LDSD]
1958
1883
-
Thr
CGT
[ENA]
¡û
>W1710710745
LDSE01000005
Gammaproteobacteria
Pantoea dispersa [LDSE]
48332
48407
+
Thr
CGT
[ENA]
¡û
>W1710710869
LDSF01000050
Gammaproteobacteria
Pantoea dispersa [LDSF]
48468
48543
+
Thr
CGT
[ENA]
¡û
>W1710710924
LDSG01000021
Gammaproteobacteria
Pantoea dispersa [LDSG]
228
153
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK