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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235346 (26 seq.)
>W1710923789
LOCK01000001
Bacillota
Desulfitobacterium hafniense [LOCK]
33827
33749
-
Arg
CCT
[ENA]
¡û
>W1711342465
MCHF01000056
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
43334
43412
+
Arg
CCT
[ENA]
¡û
>W131162535
AQYY01000010
Bacillota
Dehalobacter sp. FTH1 [AQYY]
115391
115313
-
Arg
CCT
[ENA]
¡û
>W131162712
AQZD01000007
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
146499
146421
-
Arg
CCT
[ENA]
¡û
>W131162804
AQZF01000001
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
11508
11586
+
Arg
CCT
[ENA]
¡û
>W131164705
ARAZ01000038
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
42453
42375
-
Arg
CCT
[ENA]
¡û
>C007768
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
11032
11110
+
Arg
CCT
[Ensembl]
¡û
>w002157
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
567637
567557
-
Arg
CCT
[ENA]
¡û
>W141088279
AUUR01000046
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
10293
10371
+
Arg
CCT
[ENA]
¡û
>W141246548
CANE01000002
Bacillota
Dehalobacter restrictus E1 [CANE]
105529
105451
-
Arg
CCT
[ENA]
¡û
>W141246677
CANF01002314
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
105693
105615
-
Arg
CCT
[ENA]
¡û
>WENV170659044
JXWO01000128
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
35568
35646
+
Arg
CCT
[ENA]
¢þ
>C09103963
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
11016
11094
+
Arg
CCT
[Ensembl]
¡û
>C141011718
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
12233
12311
+
Arg
CCT
[Ensembl]
¡û
>W1911608697
PNXX01000009
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
343515
343593
+
Arg
CCT
[ENA]
¡û
>W1911613533
POSF01000002
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
64322
64244
-
Arg
CCT
[ENA]
¡û
>W1511644723
LDXJ01000049
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
80979
80901
-
Arg
CCT
[ENA]
¡û
>C121011403
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
11686
11764
+
Arg
CCT
[Ensembl]
¡û
>W121007281
AFZX01000105
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
54225
54147
-
Arg
CCT
[ENA]
¡û
>W121010350
AGJE01000008
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
85544
85466
-
Arg
CCT
[ENA]
¡û
>W121010523
AGJH01000008
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
38155
38233
+
Arg
CCT
[ENA]
¡û
>C131003212
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
11447
11525
+
Arg
CCT
[Ensembl]
¡û
>C131008512
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
11882
11960
+
Arg
CCT
[Ensembl]
¡û
>C131008563
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
11882
11960
+
Arg
CCT
[Ensembl]
¡û
>W1610781390
LOCK01000001
Bacillota
Desulfitobacterium hafniense [LOCK]
33827
33749
-
Arg
CCT
[ENA]
¡û
>W1710593510
FRDN01000006
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
318805
318883
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK