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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235393 (43 seq.)
>W1710876270
LMPC01000001
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
524484
524409
-
Ala
CGC
[ENA]
¡û
>W1710880053
LMSB01000074
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
48457
48532
+
Ala
CGC
[ENA]
¡û
>W131089923
AOFD01000009
Actinomycetota
Arthrobacter nitrophenolicus SJCon [AOFD]
36329
36254
-
Ala
CGC
[ENA]
¡û
>W1711724084
MTPV01000064
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
44649
44722
+
Ala
CGC
[ENA]
¡û
>W1711768816
MVDG01000028
Actinomycetota
Arthrobacter sp. KBS0703 [MVDG]
53436
53361
-
Ala
CGC
[ENA]
¡û
>W1711853257
MYFE01000693
Actinomycetota
Arthrobacter globiformis [MYFE]
899
824
-
Ala
CGC
[ENA]
¡û
>C171091989
CP019304
Actinomycetota
Arthrobacter sp. QXT-31 [CP019304]
3754617
3754692
+
Ala
CGC
-
¡û
>C001011
CP000454
Actinomycetota
Arthrobacter sp. FB24 [CP000454]
3217490
3217415
-
Ala
CGC
[Ensembl]
¡û
>WENV180016392
FSUT01000783
[FSUT] metagenome; soil
424
497
+
Ala
CGC
[ENA]
¢þ
>WENV180018452
FSZH01000431
[FSZH] metagenome; soil
603
676
+
Ala
CGC
[ENA]
¢þ
>W141065979
AQRI01000002
Actinomycetota
Arthrobacter sp. MA-N2 [AQRI]
488281
488208
-
Ala
CGC
[ENA]
¡û
>W141106072
AVPD01000010
Actinomycetota
Arthrobacter sp. AK-YN10 [AVPD]
121086
121159
+
Ala
CGC
[ENA]
¡û
>W141246952
CAQI01000036
Actinomycetota
Pseudarthrobacter siccitolerans [CAQI]
27792
27865
+
Ala
CGC
[ENA]
¡û
>WENV183511924
OMJG01014765
[OMJG] food metagenome; Cotija cheese
129
202
+
Ala
CGC
[ENA]
¢þ
>WENV183615067
OOEA01047704
[OOEA] marine metagenome; sea ice
276
351
+
Ala
CGC
[ENA]
¢þ
>WENV170572032
FLOH01000471
[FLOH] marine metagenome; water
78870
78795
-
Ala
CGC
[ENA]
¢þ
>W141702003
JMLE01000002
Actinomycetota
Arthrobacter sp. UNC362MFTsu5.1 [JMLE]
77703
77630
-
Ala
CGC
[ENA]
¡û
>W09102042
AAHG01000004
Actinomycetota
Arthrobacter sp. FB24 [AAHG]
188401
188326
-
Ala
CGC
[ENA]
¡û
>W1930030359
NRGT01000041
Actinomycetota
Glutamicibacter sp. BW77 [NRGT]
124617
124690
+
Ala
CGC
[ENA]
¡û
>W1930035410
PCQA01000001
Actinomycetota
Arthrobacter sp. MYb213 [PCQA]
276214
276287
+
Ala
CGC
[ENA]
¡û
>W1910331232
FSLI01000041
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
53157
53231
+
Ala
CGC
[ENA]
¡û
>W1911532729
OIVI01000258
Actinomycetota
Arthrobacter alpinus [OIVI]
47715
47788
+
Ala
CGC
[ENA]
¡û
>W1911567605
PCPS01000001
Actinomycetota
Arthrobacter sp. MYb229 [PCPS]
864400
864475
+
Ala
CGC
[ENA]
¡û
>W1911567831
PCPW01000001
Actinomycetota
Arthrobacter sp. MYb221 [PCPW]
1190
1264
+
Ala
CGC
[ENA]
¡û
>W1911567955
PCPY01000001
Actinomycetota
Arthrobacter sp. MYb216 [PCPY]
864346
864421
+
Ala
CGC
[ENA]
¡û
>W1911568148
PCQB01000003
Actinomycetota
Arthrobacter sp. MYb211 [PCQB]
1190
1264
+
Ala
CGC
[ENA]
¡û
>W1911696913
QNGF01000001
Actinomycetota
Brevibacterium casei S51 [QNGF]
448813
448739
-
Ala
CGC
[ENA]
¡û
>W1810167231
PJII01000001
Actinomycetota
Arthrobacter sp. ZGTC412 [PJII]
407516
407443
-
Ala
CGC
[ENA]
¡û
>W1810167329
PJIK01000001
Actinomycetota
Arthrobacter sp. ZGTC131 [PJIK]
453871
453798
-
Ala
CGC
[ENA]
¡û
>W1810167376
PJIL01000001
Actinomycetota
Arthrobacter sp. Y81 [PJIL]
272237
272310
+
Ala
CGC
[ENA]
¡û
>W1810172029
PJMC01000016
Actinomycetota
Arthrobacter sp. AFG20 [PJMC]
45336
45409
+
Ala
CGC
[ENA]
¡û
>W1810695568
QLNP01000098
Actinomycetota
Arthrobacter globiformis mrc11 [QLNP]
392635
392708
+
Ala
CGC
[ENA]
¡û
>C151092344
CP012171
Actinomycetota
Arthrobacter sp. LS16 [CP012171]
2070864
2070937
+
Ala
CGC
-
¡û
>W1510018557
BBUE01000482
Actinomycetota
Arthrobacter sp. Hiyo6 [BBUE]
689
762
+
Ala
CGC
[ENA]
¡û
>C11101009
CP002379
Actinomycetota
Pseudarthrobacter phenanthrenivorans Sphe3 [CP002379]
2885593
2885520
-
Ala
CGC
[Ensembl]
¡û
>W1511624331
LCYH01000016
Actinomycetota
Arthrobacter sp. YC-RL1 [LCYH]
836832
836905
+
Ala
CGC
[ENA]
¡û
>C161055146
CP013297
Actinomycetota
Arthrobacter sp. YC-RL1 [CP013297]
1865881
1865808
-
Ala
CGC
[Ensembl]
¡û
>W121086831
AKKK01000047
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
203464
203537
+
Ala
CGC
[ENA]
¡û
>W121123828
BAEG01000085
Actinomycetota
Arthrobacter globiformis NBRC 12137 [BAEG]
306835
306762
-
Ala
CGC
[ENA]
¡û
>C131002322
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
3302378
3302305
-
Ala
CGC
[Ensembl]
¡û
>W1610738616
LMPC01000001
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
524484
524409
-
Ala
CGC
[ENA]
¡û
>W1610742399
LMSB01000074
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
48457
48532
+
Ala
CGC
[ENA]
¡û
>W1710550063
FOEZ01000001
Actinomycetota
Arthrobacter sp. OV608 [FOEZ]
177285
177360
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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