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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235431 (68 seq.)
>W131165139
ARBI01000009
Actinomycetota
Actinomycetospora chiangmaiensis DSM 45062 [ARBI]
564
487
-
Ala
GGC
[ENA]
¡û
>W1711183565
LWLC01000046
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
45010
45085
+
Ala
GGC
[ENA]
¡û
>W131222178
AUBB01000007
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
382405
382329
-
Ala
GGC
[ENA]
¡û
>W1711499963
MKQR01000030
Actinomycetota
Actinokineospora bangkokensis [MKQR]
1264
1339
+
Ala
GGC
[ENA]
¡û
>W1711502635
MKSW01000017
Actinomycetota
Actinobacteria bacterium 69-20 [MKSW]
55388
55313
-
Ala
GGC
[ENA]
¡û
>W1711724928
MTQP01000036
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
8625
8550
-
Ala
GGC
[ENA]
¡û
>W1711766544
MUYM01000110
Actinomycetota
Lentzea kentuckyensis [MUYM]
5915
5990
+
Ala
GGC
[ENA]
¡û
>C171033865
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
1096389
1096462
+
Ala
GGC
-
¡û
>C171045473
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
1089390
1089465
+
Ala
GGC
-
¡û
>C171045520
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
1104869
1104944
+
Ala
GGC
-
¡û
>C171051031
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
1640839
1640764
-
Ala
GGC
-
¡û
>W131170925
ARFV01000073
Actinomycetota
Actinokineospora enzanensis DSM 44649 [ARFV]
76406
76481
+
Ala
GGC
[ENA]
¡û
>W131222542
AUBJ01000001
Actinomycetota
Actinoalloteichus caeruleus DSM 43889 [AUBJ]
249740
249815
+
Ala
GGC
[ENA]
¡û
>W131228196
AUFT01000001
Actinomycetota
Nakamurella lactea DSM 19367 [AUFT]
441311
441236
-
Ala
GGC
[ENA]
¡û
>W141000329
ACQP01000201
Actinomycetota
Kutzneria sp. 744 [ACQP]
19891
19816
-
Ala
GGC
[ENA]
¡û
>WENV180694852
OCZS012751480
[OCZS] soil metagenome; soil
148
73
-
Ala
GGC
[ENA]
¢þ
>WENV181402714
OFTY01025629
[OFTY] sludge metagenome; sludge
214
288
+
Ala
GGC
[ENA]
¢þ
>W141170085
AXWW01000052
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
1003
930
-
Ala
GGC
[ENA]
¡û
>W141199772
AYXG01000129
Actinomycetota
Actinokineospora spheciospongiae EG49 [AYXG]
9533
9608
+
Ala
GGC
[ENA]
¡û
>C181067253
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
1070781
1070854
+
Ala
GGC
-
¡û
>C181081510
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
1028065
1028139
+
Ala
GGC
-
¡û
>C181124917
CP025990
Actinomycetota
Actinoalloteichus sp. AHMU CJ021 [CP025990]
1674870
1674945
+
Ala
GGC
-
¡û
>C191064783
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
1020607
1020681
+
Ala
GGC
-
¡û
>W141563928
JIAI01000031
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
21551
21626
+
Ala
GGC
[ENA]
¡û
>W141756326
JNXC01000027
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
54964
54889
-
Ala
GGC
[ENA]
¡û
>W141757605
JNYA01000219
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
4527
4452
-
Ala
GGC
[ENA]
¡û
>W141757992
JNYH01000889
Actinomycetota
Kutzneria albida [JNYH]
3285
3360
+
Ala
GGC
[ENA]
¡û
>W141758379
JNYO01000010
Actinomycetota
Saccharothrix syringae [JNYO]
112141
112066
-
Ala
GGC
[ENA]
¡û
>W141758692
JNYU01000018
Actinomycetota
Umezawaea tangerina [JNYU]
31591
31516
-
Ala
GGC
[ENA]
¡û
>W141761021
JOAL01000113
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JOAL]
661
736
+
Ala
GGC
[ENA]
¡û
>W141766187
JODV01000001
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JODV]
247613
247688
+
Ala
GGC
[ENA]
¡û
>W141766547
JOEA01000029
Actinomycetota
Lentzea albidocapillata [JOEA]
75249
75174
-
Ala
GGC
[ENA]
¡û
>W141768634
JOFI01000027
Actinomycetota
Lentzea aerocolonigenes [JOFI]
52601
52676
+
Ala
GGC
[ENA]
¡û
>W141771482
JOHE01001593
Actinomycetota
Lentzea aerocolonigenes [JOHE]
1753
1680
-
Ala
GGC
[ENA]
¡û
>W09108147
ABTA01000026
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
78416
78341
-
Ala
GGC
[ENA]
¡û
>C09100624
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
1064385
1064460
+
Ala
GGC
[Ensembl]
¡û
>W1810295951
PTIX01000004
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
40961
41034
+
Ala
GGC
[ENA]
¡û
>W1810364446
PVTF01000026
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
53650
53723
+
Ala
GGC
[ENA]
¡û
>W1810393117
PYAX01000021
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
55671
55598
-
Ala
GGC
[ENA]
¡û
>W1810573639
QEKW01000008
Actinomycetota
Actinomycetospora cinnamomea DSM 45771 [QEKW]
58445
58368
-
Ala
GGC
[ENA]
¡û
>W1810592213
QFWW01000019
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
53162
53235
+
Ala
GGC
[ENA]
¡û
>W1810597179
QGHB01000011
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
54606
54681
+
Ala
GGC
[ENA]
¡û
>W1810623483
QHCP01000015
Actinomycetota
Actinokineospora spheciospongiae CECT 8578 [QHCP]
134418
134345
-
Ala
GGC
[ENA]
¡û
>W1810697050
QLTT01000018
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
54845
54918
+
Ala
GGC
[ENA]
¡û
>W1810763048
QQAU01000010
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
265151
265078
-
Ala
GGC
[ENA]
¡û
>W1810885794
QUNO01000017
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
228711
228638
-
Ala
GGC
[ENA]
¡û
>C151017623
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
1211370
1211445
+
Ala
GGC
[Ensembl]
¡û
>C151105064
LN850107
Actinomycetota
Alloactinosynnema sp. L-07 [LN850107]
7069139
7069212
+
Ala
GGC
-
¡û
>W1510013159
BBOJ01000022
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
265073
264998
-
Ala
GGC
[ENA]
¡û
>C10112468
CP001958
Actinomycetota
Segniliparus rotundus DSM 44985 [CP001958]
2129141
2129218
+
Ala
GGC
[Ensembl]
¡û
>W11109747
ACZI01000165
Actinomycetota
Segniliparus rugosus ATCC BAA-974 [ACZI]
10495
10422
-
Ala
GGC
[ENA]
¡û
>W1511529140
JYJG01000059
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
13778
13853
+
Ala
GGC
[ENA]
¡û
>W1511697462
LGDY01000107
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
170318
170243
-
Ala
GGC
[ENA]
¡û
>W1511697744
LGED01000180
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
58736
58661
-
Ala
GGC
[ENA]
¡û
>W121021609
AGVX02000203
Actinomycetota
Actinoalloteichus spitiensis RMV-1378 [AGVX]
4164
4239
+
Ala
GGC
[ENA]
¡û
>C131019802
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
1061341
1061416
+
Ala
GGC
[Ensembl]
¡û
>W1710513248
FMZZ01000021
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
64840
64913
+
Ala
GGC
[ENA]
¡û
>W1710515789
FNCC01000006
Actinomycetota
Lentzea fradiae [FNCC]
460139
460064
-
Ala
GGC
[ENA]
¡û
>W1710518167
FNDV01000009
Actinomycetota
Actinokineospora alba album [FNDV]
111569
111494
-
Ala
GGC
[ENA]
¡û
>W1710519508
FNET01000028
Actinomycetota
Lentzea albidocapillata violacea [FNET]
55557
55632
+
Ala
GGC
[ENA]
¡û
>W1710524672
FNIX01000006
Actinomycetota
Lentzea jiangxiensis [FNIX]
232696
232623
-
Ala
GGC
[ENA]
¡û
>W1710524859
FNJB01000004
Actinomycetota
Actinokineospora alba album [FNJB]
231955
232030
+
Ala
GGC
[ENA]
¡û
>W1710550936
FOFR01000015
Actinomycetota
Lentzea xinjiangensis [FOFR]
151130
151055
-
Ala
GGC
[ENA]
¡û
>W1710551043
FOFT01000010
Actinomycetota
Lentzea flaviverrucosa [FOFT]
48482
48555
+
Ala
GGC
[ENA]
¡û
>W1710551144
FOFV01000014
Actinomycetota
Lentzea albida [FOFV]
61806
61879
+
Ala
GGC
[ENA]
¡û
>W1710551768
FOGI01000011
Actinomycetota
Actinokineospora terrae [FOGI]
53985
54060
+
Ala
GGC
[ENA]
¡û
>W1710574738
FOYL01000006
Actinomycetota
Lentzea waywayandensis [FOYL]
62440
62513
+
Ala
GGC
[ENA]
¡û
>W1710606844
FWYC01000013
Actinomycetota
Lentzea albidocapillata [FWYC]
347083
347008
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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