This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235438 (76 seq.)
>W1710877372
LMQA01000003
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
121214
121141
-
Glu
CTC
[ENA]
¡û
>W1711183539
LWLC01000017
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
30758
30685
-
Glu
CTC
[ENA]
¡û
>W1711694706
MSIF01000012
Actinomycetota
Actinophytocola xinjiangensis [MSIF]
67350
67423
+
Glu
CTC
[ENA]
¡û
>W1711724955
MTQP01000067
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
76829
76756
-
Glu
CTC
[ENA]
¡û
>W1711766493
MUYM01000001
Actinomycetota
Lentzea kentuckyensis [MUYM]
103883
103956
+
Glu
CTC
[ENA]
¡û
>C171050998
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
4316925
4316998
+
Glu
CTC
-
¡û
>W131231277
AUII01000022
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
35707
35632
-
Glu
CTC
[ENA]
¡û
>W131165163
ARBJ01000009
Actinomycetota
Actinoplanes globisporus DSM 43857 [ARBJ]
284071
283998
-
Glu
CTC
[ENA]
¡û
>WENV180690572
OCZS010011883
[OCZS] soil metagenome; soil
1671
1598
-
Glu
CTC
[ENA]
¢þ
>WENV180690573
OCZS010011883
[OCZS] soil metagenome; soil
1482
1409
-
Glu
CTC
[ENA]
¢þ
>WENV180695722
OCZS013878729
[OCZS] soil metagenome; soil
130
203
+
Glu
CTC
[ENA]
¢þ
>W141259306
CBYP010000041
Actinomycetota
Candidatus Blastococcus massiliensis AP3 [CBYP]
17116
17043
-
Glu
CTC
[ENA]
¡û
>W141259307
CBYP010000041
Actinomycetota
Candidatus Blastococcus massiliensis AP3 [CBYP]
16903
16830
-
Glu
CTC
[ENA]
¡û
>W141558003
JHVO01000015
Actinomycetota
Geodermatophilaceae bacterium URHB0062 [JHVO]
74796
74869
+
Glu
CTC
[ENA]
¡û
>W141558004
JHVO01000015
Actinomycetota
Geodermatophilaceae bacterium URHB0062 [JHVO]
74969
75042
+
Glu
CTC
[ENA]
¡û
>W141756308
JNXC01000003
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
131054
131127
+
Glu
CTC
[ENA]
¡û
>W141758383
JNYO01000019
Actinomycetota
Saccharothrix syringae [JNYO]
141112
141039
-
Glu
CTC
[ENA]
¡û
>W141766529
JOEA01000017
Actinomycetota
Lentzea albidocapillata [JOEA]
312773
312700
-
Glu
CTC
[ENA]
¡û
>W141768612
JOFI01000012
Actinomycetota
Lentzea aerocolonigenes [JOFI]
142916
142989
+
Glu
CTC
[ENA]
¡û
>W141771478
JOHE01001246
Actinomycetota
Lentzea aerocolonigenes [JOHE]
137
64
-
Glu
CTC
[ENA]
¡û
>W141775074
JOJL01000007
Actinomycetota
Actinoplanes subtropicus [JOJL]
206942
206869
-
Glu
CTC
[ENA]
¡û
>C09100645
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
7052816
7052741
-
Glu
CTC
[Ensembl]
¡û
>C09100646
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
7052679
7052606
-
Glu
CTC
[Ensembl]
¡û
>C141004748
CP006272
Actinomycetota
Actinoplanes friuliensis DSM 7358 [CP006272]
8010563
8010488
-
Glu
CTC
[Ensembl]
¡û
>W1910548486
FZOO01000001
Actinomycetota
Geodermatophilus pulveris DSM 46839 [FZOO]
608980
609053
+
Glu
CTC
[ENA]
¡û
>W1910548487
FZOO01000001
Actinomycetota
Geodermatophilus pulveris DSM 46839 [FZOO]
609161
609234
+
Glu
CTC
[ENA]
¡û
>W1910549516
FZPH01000021
Actinomycetota
Asanoa hainanensis CGMCC 4.5593 [FZPH]
71157
71084
-
Glu
CTC
[ENA]
¡û
>W1911492515
OBDY01000001
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
1119338
1119411
+
Glu
CTC
[ENA]
¡û
>W1911676719
QHHV01000196
Actinomycetota
Actinoplanes sp. ATCC 53533 [QHHV]
27235
27162
-
Glu
CTC
[ENA]
¡û
>W1911681220
QJUG01000186
Actinomycetota
Allorhizocola rhizosphaerae CPCC 204380 [QJUG]
9166
9093
-
Glu
CTC
[ENA]
¡û
>W1810222165
POQT01000031
Actinomycetota
Blastococcus saxobsidens DSM 44509 [POQT]
31299
31226
-
Glu
CTC
[ENA]
¡û
>W1810222166
POQT01000031
Actinomycetota
Blastococcus saxobsidens DSM 44509 [POQT]
31114
31041
-
Glu
CTC
[ENA]
¡û
>W1810364479
PVTG01000015
Actinomycetota
Geodermatophilus tzadiensis DSM 45416 [PVTG]
106084
106011
-
Glu
CTC
[ENA]
¡û
>W1810364480
PVTG01000015
Actinomycetota
Geodermatophilus tzadiensis DSM 45416 [PVTG]
105914
105841
-
Glu
CTC
[ENA]
¡û
>W1810393065
PYAX01000001
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
489163
489090
-
Glu
CTC
[ENA]
¡û
>W1810592182
QFWW01000002
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
227870
227797
-
Glu
CTC
[ENA]
¡û
>W1810597158
QGHB01000002
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
512554
512481
-
Glu
CTC
[ENA]
¡û
>W1810609378
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
2379603
2379676
+
Glu
CTC
[ENA]
¡û
>W1810676842
QKMH01000001
Actinomycetota
Geodermatophilus sp. DSM 44511 [QKMH]
104997
104924
-
Glu
CTC
[ENA]
¡û
>W1810697024
QLTT01000009
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
387325
387252
-
Glu
CTC
[ENA]
¡û
>W1810763019
QQAU01000002
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
123873
123800
-
Glu
CTC
[ENA]
¡û
>W1810884452
QUMQ01000001
Actinomycetota
Asanoa ferruginea DSM 44099 [QUMQ]
3979652
3979725
+
Glu
CTC
[ENA]
¡û
>C151072369
CP010797
Actinomycetota
Rhodococcus sp. B7740 [CP010797]
1570566
1570493
-
Glu
CTC
[Ensembl]
¡û
>W1510013140
BBOJ01000013
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
160075
160002
-
Glu
CTC
[ENA]
¡û
>C10107419
CP001867
Actinomycetota
Geodermatophilus obscurus DSM 43160 [CP001867]
4255620
4255547
-
Glu
CTC
[Ensembl]
¡û
>C10107420
CP001867
Actinomycetota
Geodermatophilus obscurus DSM 43160 [CP001867]
4255444
4255371
-
Glu
CTC
[Ensembl]
¡û
>C11101271
CP002786
Actinomycetota
Hoyosella subflava DQS3-9A1 [CP002786]
3262735
3262660
-
Glu
CTC
[Ensembl]
¡û
>W1511529133
JYJG01000040
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
97369
97296
-
Glu
CTC
[ENA]
¡û
>W1511697470
LGDY01000116
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
102936
102863
-
Glu
CTC
[ENA]
¡û
>W121125190
BAFV01000051
Actinomycetota
Nocardia carnea NBRC 14403 [BAFV]
137110
137037
-
Glu
CTC
[ENA]
¡û
>W121125978
BAGK01000175
Actinomycetota
Nocardia thailandica NBRC 100428 [BAGK]
15345
15272
-
Glu
CTC
[ENA]
¡û
>W121125993
BAGK01000294
Actinomycetota
Nocardia thailandica NBRC 100428 [BAGK]
11229
11304
+
Glu
CTC
[ENA]
¡û
>W1610069097
BCRV01000002
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
84757
84684
-
Glu
CTC
[ENA]
¡û
>C131019822
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
7954022
7953949
-
Glu
CTC
[Ensembl]
¡û
>W1610739718
LMQA01000003
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
121214
121141
-
Glu
CTC
[ENA]
¡û
>W1710066470
BCRV01000002
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
84757
84684
-
Glu
CTC
[ENA]
¡û
>W1710512189
FMZF01000001
Actinomycetota
Geodermatophilus telluris [FMZF]
102508
102435
-
Glu
CTC
[ENA]
¡û
>W1710512190
FMZF01000001
Actinomycetota
Geodermatophilus telluris [FMZF]
102336
102263
-
Glu
CTC
[ENA]
¡û
>W1710515792
FNCC01000007
Actinomycetota
Lentzea fradiae [FNCC]
352259
352186
-
Glu
CTC
[ENA]
¡û
>W1710519478
FNET01000011
Actinomycetota
Lentzea albidocapillata violacea [FNET]
65091
65018
-
Glu
CTC
[ENA]
¡û
>W1710524346
FNIQ01000008
Actinomycetota
Geodermatophilus sp. DSM 45219 [FNIQ]
109859
109932
+
Glu
CTC
[ENA]
¡û
>W1710524347
FNIQ01000008
Actinomycetota
Geodermatophilus sp. DSM 45219 [FNIQ]
110038
110111
+
Glu
CTC
[ENA]
¡û
>W1710524648
FNIX01000001
Actinomycetota
Lentzea jiangxiensis [FNIX]
976123
976196
+
Glu
CTC
[ENA]
¡û
>W1710530726
FNOZ01000003
Actinomycetota
Modestobacter sp. DSM 44400 [FNOZ]
130111
130184
+
Glu
CTC
[ENA]
¡û
>W1710530727
FNOZ01000003
Actinomycetota
Modestobacter sp. DSM 44400 [FNOZ]
130310
130383
+
Glu
CTC
[ENA]
¡û
>W1710532162
FNQB01000002
Actinomycetota
Asanoa ishikariensis [FNQB]
1009050
1009123
+
Glu
CTC
[ENA]
¡û
>W1710550932
FOFR01000012
Actinomycetota
Lentzea xinjiangensis [FOFR]
164336
164409
+
Glu
CTC
[ENA]
¡û
>W1710551024
FOFT01000006
Actinomycetota
Lentzea flaviverrucosa [FOFT]
124736
124663
-
Glu
CTC
[ENA]
¡û
>W1710551158
FOFV01000023
Actinomycetota
Lentzea albida [FOFV]
104218
104291
+
Glu
CTC
[ENA]
¡û
>W1710560137
FOND01000005
Actinomycetota
Blastococcus sp. DSM 46838 [FOND]
202841
202914
+
Glu
CTC
[ENA]
¡û
>W1710560138
FOND01000005
Actinomycetota
Blastococcus sp. DSM 46838 [FOND]
203203
203276
+
Glu
CTC
[ENA]
¡û
>W1710571780
FOWE01000007
Actinomycetota
Geodermatophilus obscurus [FOWE]
68881
68808
-
Glu
CTC
[ENA]
¡û
>W1710572367
FOWQ01000002
Actinomycetota
Geodermatophilus dictyosporus DSM 44208 [FOWQ]
105669
105596
-
Glu
CTC
[ENA]
¡û
>W1710574715
FOYL01000003
Actinomycetota
Lentzea waywayandensis [FOYL]
887281
887354
+
Glu
CTC
[ENA]
¡û
>W1710577743
FPBA01000009
Actinomycetota
Geodermatophilus amargosae [FPBA]
105945
105872
-
Glu
CTC
[ENA]
¡û
>W1710606826
FWYC01000008
Actinomycetota
Lentzea albidocapillata [FWYC]
141509
141582
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK