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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235519 (103 seq.)
>W131010737
AHYR01000003
Bacillota
Enterococcus dispar ATCC 51266 [AHYR]
84171
84245
+
Val
TAC
[ENA]
¡û
>W131010767
AHYR01000008
Bacillota
Enterococcus dispar ATCC 51266 [AHYR]
1074
1000
-
Val
TAC
[ENA]
¡û
>W131010779
AHYR01000011
Bacillota
Enterococcus dispar ATCC 51266 [AHYR]
3244
3318
+
Val
TAC
[ENA]
¡û
>W131027764
AJAQ01000010
Bacillota
Enterococcus pallens ATCC BAA-351 [AJAQ]
5078
5152
+
Val
TAC
[ENA]
¡û
>W131027772
AJAQ01000012
Bacillota
Enterococcus pallens ATCC BAA-351 [AJAQ]
3249
3323
+
Val
TAC
[ENA]
¡û
>W131201148
ASVX01000004
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
238421
238347
-
Val
TAC
[ENA]
¡û
>W131201157
ASVX01000005
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
124
198
+
Val
TAC
[ENA]
¡û
>W1712068217
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
2589869
2589941
+
Val
TAC
[ENA]
¡û
>W1712068230
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
1493745
1493671
-
Val
TAC
[ENA]
¡û
>W1712068238
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
1219697
1219623
-
Val
TAC
[ENA]
¡û
>W1712069785
NGMQ01000001
Bacillota
Enterococcus gallinarum [NGMQ]
5104
5178
+
Val
TAC
[ENA]
¡û
>W1712069811
NGMQ01000002
Bacillota
Enterococcus gallinarum [NGMQ]
203727
203801
+
Val
TAC
[ENA]
¡û
>W1712069852
NGMQ01000002
Bacillota
Enterococcus gallinarum [NGMQ]
596
522
-
Val
TAC
[ENA]
¡û
>W1712097161
NIBP01000002
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
5057
5131
+
Val
TAC
[ENA]
¡û
>W1712097169
NIBP01000002
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
345864
345938
+
Val
TAC
[ENA]
¡û
>W131201133
ASVX01000002
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
605815
605743
-
Val
TAC
[ENA]
¡û
>WENV180180458
OAWK01001878
[OAWK] human gut metagenome; faeces
1232
1306
+
Val
TAC
[ENA]
¢þ
>WENV180415074
OBVD01006333
[OBVD] human gut metagenome; faeces
471
545
+
Val
TAC
[ENA]
¢þ
>WENV180449221
OBXF01007613
[OBXF] human gut metagenome; faeces
596
524
-
Val
TAC
[ENA]
¢þ
>WENV180457628
OBXV01000004
[OBXV] human gut metagenome; faeces
302
374
+
Val
TAC
[ENA]
¢þ
>WENV180503813
OCAN01000068
[OCAN] human gut metagenome; faeces
384
456
+
Val
TAC
[ENA]
¢þ
>WENV180504364
OCAN01001869
[OCAN] human gut metagenome; faeces
5442
5368
-
Val
TAC
[ENA]
¢þ
>WENV180977015
ODUY01423312
[ODUY] human metagenome; G_DNA_Supragingival plaque
133
58
-
Val
TAC
[ENA]
¢þ
>WENV181073038
OEAN01120872
[OEAN] human metagenome; G_DNA_Stool
14
89
+
Val
TAC
[ENA]
¢þ
>WENV181717763
OGPT01002668
[OGPT] human gut metagenome; faeces
1992
1917
-
Val
TAC
[ENA]
¢þ
>WENV182062123
OHEU01017596
[OHEU] human gut metagenome; feces
550
625
+
Val
TAC
[ENA]
¢þ
>WENV182613488
OJKA01000741
[OJKA] metagenome; faeces
9530
9604
+
Val
TAC
[ENA]
¢þ
>WENV182632278
OJKW01059464
[OJKW] metagenome; faeces
132
207
+
Val
TAC
[ENA]
¢þ
>WENV182803482
OJUL01001106
[OJUL] human gut metagenome; human gut
4239
4165
-
Val
TAC
[ENA]
¢þ
>WENV170541164
CXPK01000540
[CXPK] human gut metagenome genome assembly hA2, contig hA2_contig001157.; ENVO:feces
3177
3103
-
Val
TAC
[ENA]
¢þ
>WENV170541191
CXPK01000834
[CXPK] human gut metagenome genome assembly hA2, contig hA2_contig001157.; ENVO:feces
5373
5447
+
Val
TAC
[ENA]
¢þ
>WENV170700192
LIDZ01007082
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
340
414
+
Val
TAC
[ENA]
¢þ
>C181083345
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
2466624
2466696
+
Val
TAC
-
¡û
>C181083358
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
1423788
1423714
-
Val
TAC
-
¡û
>C181083367
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
1113968
1113894
-
Val
TAC
-
¡û
>C191007176
AP019309
Bacillota
Intestinibaculum porci SG0102 [AP019309]
156911
156986
+
Val
TAC
-
¡û
>C191007235
AP019309
Bacillota
Intestinibaculum porci SG0102 [AP019309]
2166528
2166453
-
Val
TAC
-
¡û
>C191012734
CP016844
Bacillota
Carnobacterium maltaromaticum TMW 2.1581 [CP016844]
580625
580700
+
Val
TAC
-
¡û
>C191012764
CP016844
Bacillota
Carnobacterium maltaromaticum TMW 2.1581 [CP016844]
2640195
2640120
-
Val
TAC
-
¡û
>C191012777
CP016844
Bacillota
Carnobacterium maltaromaticum TMW 2.1581 [CP016844]
1880836
1880762
-
Val
TAC
-
¡û
>W141820474
JQMX01000001
Bacillota
Carnobacterium maltaromaticum DSM 20342 [JQMX]
2607392
2607467
+
Val
TAC
[ENA]
¡û
>W141820486
JQMX01000001
Bacillota
Carnobacterium maltaromaticum DSM 20342 [JQMX]
3435846
3435920
+
Val
TAC
[ENA]
¡û
>W141820506
JQMX01000001
Bacillota
Carnobacterium maltaromaticum DSM 20342 [JQMX]
1235144
1235069
-
Val
TAC
[ENA]
¡û
>W1910184173
BJOJ01000044
Bacillota
Carnobacterium maltaromaticum NBRC 15685 [BJOJ]
31705
31631
-
Val
TAC
[ENA]
¡û
>W1910193652
CVMZ01000089
Bacillota
Carnobacterium maltaromaticum 3·î18Æü [CVMZ]
339
413
+
Val
TAC
[ENA]
¡û
>W1910193701
CVNA01000035
Bacillota
Carnobacterium maltaromaticum ML_1_97 [CVNA]
339
413
+
Val
TAC
[ENA]
¡û
>W1910641100
LTCM01000012
Bacillota
Streptococcus pneumoniae NTPn 130 [LTCM]
8923
8851
-
Val
TAC
[ENA]
¡û
>W1911217142
NRPR01000012
Bacillota
Carnobacterium maltaromaticum A18 [NRPR]
76288
76214
-
Val
TAC
[ENA]
¡û
>W1911217152
NRPR01000013
Bacillota
Carnobacterium maltaromaticum A18 [NRPR]
779610
779535
-
Val
TAC
[ENA]
¡û
>W1911217188
NRPS01000012
Bacillota
Carnobacterium maltaromaticum A17 [NRPS]
76288
76214
-
Val
TAC
[ENA]
¡û
>W1911217198
NRPS01000013
Bacillota
Carnobacterium maltaromaticum A17 [NRPS]
779487
779412
-
Val
TAC
[ENA]
¡û
>W1911217233
NRPT01000012
Bacillota
Carnobacterium maltaromaticum A16 [NRPT]
76288
76214
-
Val
TAC
[ENA]
¡û
>W1911217243
NRPT01000013
Bacillota
Carnobacterium maltaromaticum A16 [NRPT]
779733
779658
-
Val
TAC
[ENA]
¡û
>W1911217286
NRPU01000012
Bacillota
Carnobacterium maltaromaticum A15 [NRPU]
76288
76214
-
Val
TAC
[ENA]
¡û
>W1911217296
NRPU01000013
Bacillota
Carnobacterium maltaromaticum A15 [NRPU]
779487
779412
-
Val
TAC
[ENA]
¡û
>W1911217339
NRPV01000014
Bacillota
Carnobacterium maltaromaticum A14 [NRPV]
76288
76214
-
Val
TAC
[ENA]
¡û
>W1911217349
NRPV01000015
Bacillota
Carnobacterium maltaromaticum A14 [NRPV]
779685
779610
-
Val
TAC
[ENA]
¡û
>W1911217642
NRQC01000006
Bacillota
Carnobacterium maltaromaticum A7 [NRQC]
137
212
+
Val
TAC
[ENA]
¡û
>W1911217674
NRQC01000012
Bacillota
Carnobacterium maltaromaticum A7 [NRQC]
63785
63711
-
Val
TAC
[ENA]
¡û
>W1911217686
NRQC01000014
Bacillota
Carnobacterium maltaromaticum A7 [NRQC]
12791
12716
-
Val
TAC
[ENA]
¡û
>W1911217726
NRQD01000014
Bacillota
Carnobacterium maltaromaticum A6 [NRQD]
76288
76214
-
Val
TAC
[ENA]
¡û
>W1911217736
NRQD01000015
Bacillota
Carnobacterium maltaromaticum A6 [NRQD]
779487
779412
-
Val
TAC
[ENA]
¡û
>W1911217772
NRQE01000013
Bacillota
Carnobacterium maltaromaticum A5 [NRQE]
76288
76214
-
Val
TAC
[ENA]
¡û
>W1911217782
NRQE01000014
Bacillota
Carnobacterium maltaromaticum A5 [NRQE]
779487
779412
-
Val
TAC
[ENA]
¡û
>W1911217836
NRQG01000009
Bacillota
Carnobacterium maltaromaticum A3 [NRQG]
162
237
+
Val
TAC
[ENA]
¡û
>W1911217867
NRQG01000020
Bacillota
Carnobacterium maltaromaticum A3 [NRQG]
67559
67485
-
Val
TAC
[ENA]
¡û
>W1911217877
NRQG01000022
Bacillota
Carnobacterium maltaromaticum A3 [NRQG]
726582
726507
-
Val
TAC
[ENA]
¡û
>W1911217946
NRQI01000008
Bacillota
Carnobacterium maltaromaticum A1 [NRQI]
161
236
+
Val
TAC
[ENA]
¡û
>W1911217977
NRQI01000020
Bacillota
Carnobacterium maltaromaticum A1 [NRQI]
67559
67485
-
Val
TAC
[ENA]
¡û
>W1911217987
NRQI01000022
Bacillota
Carnobacterium maltaromaticum A1 [NRQI]
726596
726521
-
Val
TAC
[ENA]
¡û
>W1810184818
PKFE01000007
Bacillota
Carnobacterium maltaromaticum SK_LD3 [PKFE]
164898
164824
-
Val
TAC
[ENA]
¡û
>W1810184881
PKFF01000008
Bacillota
Carnobacterium maltaromaticum SK_LD2 [PKFF]
164874
164800
-
Val
TAC
[ENA]
¡û
>W1810184921
PKFG01000008
Bacillota
Carnobacterium maltaromaticum SK_LD1 [PKFG]
164874
164800
-
Val
TAC
[ENA]
¡û
>W1810184952
PKFH01000008
Bacillota
Carnobacterium maltaromaticum SK_AV6 [PKFH]
164901
164827
-
Val
TAC
[ENA]
¡û
>W1810184999
PKFI01000007
Bacillota
Carnobacterium maltaromaticum SK_AV5 [PKFI]
351
425
+
Val
TAC
[ENA]
¡û
>W1810185027
PKFJ01000007
Bacillota
Carnobacterium maltaromaticum SK_AV4 [PKFJ]
164874
164800
-
Val
TAC
[ENA]
¡û
>W1810185073
PKFK01000007
Bacillota
Carnobacterium maltaromaticum SK_AV3 [PKFK]
164874
164800
-
Val
TAC
[ENA]
¡û
>W1810185119
PKFL01000007
Bacillota
Carnobacterium maltaromaticum SK_AV2 [PKFL]
164900
164826
-
Val
TAC
[ENA]
¡û
>W1810185165
PKFM01000007
Bacillota
Carnobacterium maltaromaticum SK_AV1 [PKFM]
164900
164826
-
Val
TAC
[ENA]
¡û
>C151099725
HE999757
Bacillota
Carnobacterium maltaromaticum LMA28 [HE999757]
1087778
1087853
+
Val
TAC
[Ensembl]
¡û
>C151099748
HE999757
Bacillota
Carnobacterium maltaromaticum LMA28 [HE999757]
3350369
3350294
-
Val
TAC
[Ensembl]
¡û
>C151099761
HE999757
Bacillota
Carnobacterium maltaromaticum LMA28 [HE999757]
2526769
2526695
-
Val
TAC
[Ensembl]
¡û
>W11151175
AEWT01000030
Bacillota
Enterococcus casseliflavus ATCC 12755 [AEWT]
166600
166528
-
Val
TAC
[ENA]
¡û
>W11151188
AEWT01000055
Bacillota
Enterococcus casseliflavus ATCC 12755 [AEWT]
16
90
+
Val
TAC
[ENA]
¡û
>W121011925
AGNS01000005
Bacillota
Carnobacterium maltaromaticum ATCC 35586 [AGNS]
230
305
+
Val
TAC
[ENA]
¡û
>W121011940
AGNS01000014
Bacillota
Carnobacterium maltaromaticum ATCC 35586 [AGNS]
9811
9736
-
Val
TAC
[ENA]
¡û
>W121011974
AGNS01000071
Bacillota
Carnobacterium maltaromaticum ATCC 35586 [AGNS]
458
532
+
Val
TAC
[ENA]
¡û
>W1610528431
JQBG01000080
Bacillota
Carnobacterium maltaromaticum DSM 20342 [JQBG]
94
169
+
Val
TAC
[ENA]
¡û
>W1610528475
JQBG01000108
Bacillota
Carnobacterium maltaromaticum DSM 20342 [JQBG]
309
383
+
Val
TAC
[ENA]
¡û
>W1610529073
JQBU01000028
Bacillota
Carnobacterium maltaromaticum [JQBU]
162
87
-
Val
TAC
[ENA]
¡û
>W1610529109
JQBU01000035
Bacillota
Carnobacterium maltaromaticum [JQBU]
25023
24949
-
Val
TAC
[ENA]
¡û
>W1610529122
JQBV01000003
Bacillota
Carnobacterium maltaromaticum [JQBV]
567
641
+
Val
TAC
[ENA]
¡û
>W1610529157
JQBV01000045
Bacillota
Carnobacterium maltaromaticum [JQBV]
95
170
+
Val
TAC
[ENA]
¡û
>W1710520622
FNFS01000017
Bacillota
Enterococcus casseliflavus [FNFS]
77665
77593
-
Val
TAC
[ENA]
¡û
>W1710549439
FOEN01000001
Bacillota
Ignavigranum ruoffiae [FOEN]
457953
457878
-
Val
TAC
[ENA]
¡û
>W1710553514
FOHR01000009
Bacillota
Enterococcus malodoratus kppr-6 [FOHR]
159660
159586
-
Val
TAC
[ENA]
¡û
>W1710630021
JQBG01000080
Bacillota
Carnobacterium maltaromaticum DSM 20342 [JQBG]
94
169
+
Val
TAC
[ENA]
¡û
>W1710630065
JQBG01000108
Bacillota
Carnobacterium maltaromaticum DSM 20342 [JQBG]
309
383
+
Val
TAC
[ENA]
¡û
>W1710630663
JQBU01000028
Bacillota
Carnobacterium maltaromaticum [JQBU]
162
87
-
Val
TAC
[ENA]
¡û
>W1710630699
JQBU01000035
Bacillota
Carnobacterium maltaromaticum [JQBU]
25023
24949
-
Val
TAC
[ENA]
¡û
>W1710630712
JQBV01000003
Bacillota
Carnobacterium maltaromaticum [JQBV]
567
641
+
Val
TAC
[ENA]
¡û
>W1710630747
JQBV01000045
Bacillota
Carnobacterium maltaromaticum [JQBV]
95
170
+
Val
TAC
[ENA]
¡û
>W1710659071
JXKD01000006
Bacillota
Enterococcus aquimarinus [JXKD]
145284
145208
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK