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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23554 (106 seq.)
>W1711069411
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
182166
182077
-
Ser
TGA
[ENA]
¡û
>W1711129175
LUTU01000004
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
37457
37368
-
Ser
TGA
[ENA]
¡û
>W1711143216
LVHE01000015
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
51584
51495
-
Ser
TGA
[ENA]
¡û
>W1711466254
MJME01000116
Alphaproteobacteria
Novacetimonas hansenii [MJME]
106296
106207
-
Ser
TGA
[ENA]
¡û
>W1712049850
NFUR01000003
Alphaproteobacteria
Sphingomonas sp. IBVSS2 [NFUR]
522784
522873
+
Ser
TGA
[ENA]
¡û
>C171033029
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
1777265
1777354
+
Ser
TGA
-
¡û
>C171074571
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1201772
1201683
-
Ser
TGA
-
¡û
>C171074623
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1220828
1220739
-
Ser
TGA
-
¡û
>C171074675
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1201462
1201373
-
Ser
TGA
-
¡û
>C171074727
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1208741
1208652
-
Ser
TGA
-
¡û
>C171074779
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1220829
1220740
-
Ser
TGA
-
¡û
>C171074831
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1201832
1201743
-
Ser
TGA
-
¡û
>C171115129
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
515544
515633
+
Ser
TGA
-
¡û
>W131240807
BAON01000014
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
10094
10005
-
Ser
TGA
[ENA]
¡û
>W131241370
BARL01000001
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
1096380
1096469
+
Ser
TGA
[ENA]
¡û
>W131046808
AMSR01000006
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
181923
181834
-
Ser
TGA
[ENA]
¡û
>W131222496
AUBI01000001
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
109601
109690
+
Ser
TGA
[ENA]
¡û
>C009853
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1201802
1201713
-
Ser
TGA
[Ensembl]
¡û
>C027957
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
743675
743586
-
Ser
TGA
[Ensembl]
¡û
>WENV180100161
OAOK01000097
[OAOK] sediment metagenome; sediment
19041
18952
-
Ser
TGA
[ENA]
¢þ
>WENV180100449
OAON01002231
[OAON] sediment metagenome; sediment
198
109
-
Ser
TGA
[ENA]
¢þ
>WENV180355123
OBNG01010198
[OBNG] sediment metagenome; sediment
439
350
-
Ser
TGA
[ENA]
¢þ
>WENV180355293
OBNH01000356
[OBNH] sediment metagenome; sediment
8182
8093
-
Ser
TGA
[ENA]
¢þ
>WENV180355544
OBNI01000513
[OBNI] sediment metagenome; sediment
1176
1265
+
Ser
TGA
[ENA]
¢þ
>WENV180355846
OBNJ01001225
[OBNJ] sediment metagenome; sediment
1793
1704
-
Ser
TGA
[ENA]
¢þ
>WENV180356197
OBNK01001407
[OBNK] sediment metagenome; sediment
998
1087
+
Ser
TGA
[ENA]
¢þ
>WENV181402704
OFTY01022095
[OFTY] sludge metagenome; sludge
615
526
-
Ser
TGA
[ENA]
¢þ
>W08009523
ABPH01000011
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
93005
92919
-
Ser
TGA
[ENA]
¡û
>W141224589
BAIO01000018
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
507
418
-
Ser
TGA
[ENA]
¡û
>W141226066
BAJT01000005
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
139756
139845
+
Ser
TGA
[ENA]
¡û
>W141226178
BAJV01000024
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
13794
13883
+
Ser
TGA
[ENA]
¡û
>W141227269
BAKW01000015
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
52180
52269
+
Ser
TGA
[ENA]
¡û
>W141229910
BASM01000001
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
252746
252835
+
Ser
TGA
[ENA]
¡û
>C08005255
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
3314683
3314772
+
Ser
TGA
[Ensembl]
¡û
>WENV183744309
PJUK01006387
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
423
334
-
Ser
TGA
[ENA]
¢þ
>WENV183745055
PJUL01001722
[PJUL] feces metagenome; Chicken feces enriched on filter paper
995
906
-
Ser
TGA
[ENA]
¢þ
>WENV170010542
APMI01019919
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9423
9512
+
Ser
TGA
[ENA]
¢þ
>WENV170564977
CZQE01000026
[CZQE] hydrothermal vent metagenome; ocean water
6739
6650
-
Ser
TGA
[ENA]
¢þ
>C181088893
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
746056
745967
-
Ser
TGA
-
¡û
>C181088944
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
746056
745967
-
Ser
TGA
-
¡û
>C181089271
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
746056
745967
-
Ser
TGA
-
¡û
>C191145618
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
743655
743566
-
Ser
TGA
-
¡û
>C191145669
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
743655
743566
-
Ser
TGA
-
¡û
>C191145720
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
743655
743566
-
Ser
TGA
-
¡û
>W09133949
ACQU01000002
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
45913
46002
+
Ser
TGA
[ENA]
¡û
>W1910015202
BDLU01000032
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
96030
96119
+
Ser
TGA
[ENA]
¡û
>W1910015248
BDLW01000013
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
282282
282371
+
Ser
TGA
[ENA]
¡û
>W1910182405
BJMW01000005
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
82961
83050
+
Ser
TGA
[ENA]
¡û
>W1910182438
BJMX01000001
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
253690
253779
+
Ser
TGA
[ENA]
¡û
>W1910183234
BJNN01000128
Alphaproteobacteria
Novacetimonas hansenii NBRC 14820 [BJNN]
14594
14683
+
Ser
TGA
[ENA]
¡û
>C141008790
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
630791
630880
+
Ser
TGA
[Ensembl]
¡û
>W1910694753
MDTO01000327
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
4153
4242
+
Ser
TGA
[ENA]
¡û
>W1910972012
NKCY01000001
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
385867
385778
-
Ser
TGA
[ENA]
¡û
>W1911597826
PNQZ01000019
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
134586
134497
-
Ser
TGA
[ENA]
¡û
>W1810000624
BEWL01000012
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
89847
89936
+
Ser
TGA
[ENA]
¡û
>W1810000671
BEWM01000003
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
46274
46185
-
Ser
TGA
[ENA]
¡û
>W1810000720
BEWN01000004
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
11549
11460
-
Ser
TGA
[ENA]
¡û
>W1810000731
BEWO01000002
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
232205
232294
+
Ser
TGA
[ENA]
¡û
>W1810000796
BEWP01000005
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
241795
241884
+
Ser
TGA
[ENA]
¡û
>W1810577299
QEOD01000002
Alphaproteobacteria
Sphingomonas sp. CF311 [QEOD]
1105024
1105113
+
Ser
TGA
[ENA]
¡û
>C151004043
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1213143
1213054
-
Ser
TGA
[Ensembl]
¡û
>C151004079
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2257636
2257725
+
Ser
TGA
[Ensembl]
¡û
>C151004131
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2213971
2214060
+
Ser
TGA
[Ensembl]
¡û
>C151004589
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
630566
630655
+
Ser
TGA
[Ensembl]
¡û
>C151004640
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
630566
630655
+
Ser
TGA
[Ensembl]
¡û
>C151006030
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
2168405
2168494
+
Ser
TGA
[Ensembl]
¡û
>C10114573
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
628261
628350
+
Ser
TGA
[Ensembl]
¡û
>W1511352578
JROH01000038
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
5382
5293
-
Ser
TGA
[ENA]
¡û
>C11124213
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
576835
576924
+
Ser
TGA
[Ensembl]
¡û
>W1511620468
LCTG01000004
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
334390
334301
-
Ser
TGA
[ENA]
¡û
>W11186889
CADS01000009
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
77079
76990
-
Ser
TGA
[ENA]
¡û
>W11186938
CADT01000001
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
181998
181909
-
Ser
TGA
[ENA]
¡û
>C121003134
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
629052
629141
+
Ser
TGA
[Ensembl]
¡û
>C121015247
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
627790
627879
+
Ser
TGA
[Ensembl]
¡û
>C161096016
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
3201010
3201099
+
Ser
TGA
-
¡û
>W1610041193
BANG01000043
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
63932
64021
+
Ser
TGA
[ENA]
¡û
>W1610041231
BANH01000061
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
87227
87316
+
Ser
TGA
[ENA]
¡û
>W121034280
AHKI01000070
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
35282
35371
+
Ser
TGA
[ENA]
¡û
>W121123425
BADZ01000011
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
85962
86051
+
Ser
TGA
[ENA]
¡û
>W1610187965
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
1497435
1497524
+
Ser
TGA
[ENA]
¡û
>C131009972
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
2283249
2283160
-
Ser
TGA
[Ensembl]
¡û
>W1610624302
LHZH01000104
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
23197
23286
+
Ser
TGA
[ENA]
¡û
>W1610624361
LHZI01001585
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
1095
1184
+
Ser
TGA
[ENA]
¡û
>W1610624404
LHZJ01000080
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
133633
133722
+
Ser
TGA
[ENA]
¡û
>W1610624470
LHZK01000128
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
8106
8017
-
Ser
TGA
[ENA]
¡û
>W1610624533
LHZM01000079
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
4776
4687
-
Ser
TGA
[ENA]
¡û
>W1610624580
LHZN01000126
Alphaproteobacteria
Gluconobacter albidus [LHZN]
49297
49386
+
Ser
TGA
[ENA]
¡û
>W1610624646
LHZO01000064
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
334981
335070
+
Ser
TGA
[ENA]
¡û
>W1610624774
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
239702
239791
+
Ser
TGA
[ENA]
¡û
>W1610624810
LHZS01000097
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
95096
95185
+
Ser
TGA
[ENA]
¡û
>W1610909939
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
182166
182077
-
Ser
TGA
[ENA]
¡û
>W1610940248
LUTU01000004
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
37457
37368
-
Ser
TGA
[ENA]
¡û
>W1610954224
LVHE01000015
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
51584
51495
-
Ser
TGA
[ENA]
¡û
>W1710038391
BANG01000043
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
63932
64021
+
Ser
TGA
[ENA]
¡û
>W1710038429
BANH01000061
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
87227
87316
+
Ser
TGA
[ENA]
¡û
>W1710189581
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
1497435
1497524
+
Ser
TGA
[ENA]
¡û
>W1710624803
JOPH01000006
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
65418
65507
+
Ser
TGA
[ENA]
¡û
>W1710755420
LHZH01000104
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
23197
23286
+
Ser
TGA
[ENA]
¡û
>W1710755479
LHZI01001585
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
1095
1184
+
Ser
TGA
[ENA]
¡û
>W1710755522
LHZJ01000080
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
133633
133722
+
Ser
TGA
[ENA]
¡û
>W1710755588
LHZK01000128
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
8106
8017
-
Ser
TGA
[ENA]
¡û
>W1710755651
LHZM01000079
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
4776
4687
-
Ser
TGA
[ENA]
¡û
>W1710755698
LHZN01000126
Alphaproteobacteria
Gluconobacter albidus [LHZN]
49297
49386
+
Ser
TGA
[ENA]
¡û
>W1710755764
LHZO01000064
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
334981
335070
+
Ser
TGA
[ENA]
¡û
>W1710755892
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
239702
239791
+
Ser
TGA
[ENA]
¡û
>W1710755928
LHZS01000097
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
95096
95185
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK