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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235544 (11 seq.)
>WENV180282571
OBIC01000192
[OBIC] beach sand metagenome; beach sand
23029
22954
-
His
GTG
[ENA]
¢þ
>WENV180309538
OBJS01005539
[OBJS] beach sand metagenome; beach sand
1314
1389
+
His
GTG
[ENA]
¢þ
>WENV170669084
LAHR01007297
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
86
161
+
His
GTG
[ENA]
¢þ
>C151093953
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
723500
723425
-
His
GTG
-
¡û
>C151094005
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
649983
649908
-
His
GTG
-
¡û
>C151094043
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1904323
1904248
-
His
GTG
-
¡û
>C151094107
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
282432
282357
-
His
GTG
-
¡û
>C151094118
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
387510
387585
+
His
GTG
-
¡û
>C151094211
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
334912
334837
-
His
GTG
-
¡û
>C151094265
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
283432
283357
-
His
GTG
-
¡û
>C161041399
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
287282
287207
-
His
GTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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