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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235546 (8 seq.)
>WENV170979192
MTKZ01079928
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
743
670
-
Trp
CCA
[ENA]
¢þ
>C151093925
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
2053373
2053448
+
Trp
CCA
-
¡û
>C151093992
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1413738
1413663
-
Trp
CCA
-
¡û
>C151094017
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
847619
847694
+
Trp
CCA
-
¡û
>C151094130
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1897165
1897240
+
Trp
CCA
-
¡û
>C151094199
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
1177213
1177138
-
Trp
CCA
-
¡û
>C151094252
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1096018
1095943
-
Trp
CCA
-
¡û
>C161041366
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1575374
1575449
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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