This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235585 (26 seq.)
>WENV180015904
FSTQ01000231
[FSTQ] metagenome; soil
1539
1464
-
Asn
GTT
[ENA]
¢þ
>WENV180022183
FTFT01000817
[FTFT] metagenome; soil
577
502
-
Asn
GTT
[ENA]
¢þ
>W141073085
ASRX01000005
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
201282
201357
+
Asn
GTT
[ENA]
¡û
>WENV181173267
OEIV011337203
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
88
13
-
Lys
TTT
[ENA]
¢þ
>C08008913
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
1561928
1562003
+
Asn
GTT
[Ensembl]
¡û
>C181012483
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
2061270
2061345
+
Asn
GTT
-
¡û
>C191010012
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
1433976
1434051
+
Asn
GTT
-
¡û
>C191010063
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
2211541
2211616
+
Asn
GTT
-
¡û
>C151091982
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
9172264
9172189
-
Asn
GTT
-
¡û
>W1610048962
BBEO01000057
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
2988
2913
-
Asn
GTT
[ENA]
¡û
>C131010747
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
2225249
2225324
+
Asn
GTT
[Ensembl]
¡û
>W1610520397
JELX01002296
Myxococcota
Sorangium cellulosum [JELX]
19874
19799
-
Asn
GTT
[ENA]
¡û
>W1610520416
JELY01000461
Myxococcota
Sorangium cellulosum [JELY]
25755
25680
-
Asn
GTT
[ENA]
¡û
>W1610520461
JELZ01000045
Myxococcota
Sorangium cellulosum [JELZ]
388
313
-
Asn
GTT
[ENA]
¡û
>W1610520516
JEMA01000308
Myxococcota
Sorangium cellulosum [JEMA]
5125
5050
-
Asn
GTT
[ENA]
¡û
>W1610520610
JEMB01003510
Myxococcota
Sorangium cellulosum [JEMB]
13660
13585
-
Asn
GTT
[ENA]
¡û
>W1610520680
JEMD01001551
Myxococcota
Sorangium cellulosum [JEMD]
4016
4091
+
Asn
GTT
[ENA]
¡û
>W1610520734
JEME01001522
Myxococcota
Sorangium cellulosum [JEME]
349
424
+
Asn
GTT
[ENA]
¡û
>W1710045434
BBEO01000057
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
2988
2913
-
Asn
GTT
[ENA]
¡û
>W1710615875
JELX01002296
Myxococcota
Sorangium cellulosum [JELX]
19874
19799
-
Asn
GTT
[ENA]
¡û
>W1710615894
JELY01000461
Myxococcota
Sorangium cellulosum [JELY]
25755
25680
-
Asn
GTT
[ENA]
¡û
>W1710615939
JELZ01000045
Myxococcota
Sorangium cellulosum [JELZ]
388
313
-
Asn
GTT
[ENA]
¡û
>W1710615994
JEMA01000308
Myxococcota
Sorangium cellulosum [JEMA]
5125
5050
-
Asn
GTT
[ENA]
¡û
>W1710616088
JEMB01003510
Myxococcota
Sorangium cellulosum [JEMB]
13660
13585
-
Asn
GTT
[ENA]
¡û
>W1710616158
JEMD01001551
Myxococcota
Sorangium cellulosum [JEMD]
4016
4091
+
Asn
GTT
[ENA]
¡û
>W1710616212
JEME01001522
Myxococcota
Sorangium cellulosum [JEME]
349
424
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK