This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235626 (108 seq.)
>W1710860303
LMCT01000045
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
223769
223694
-
His
GTG
[ENA]
¡û
>W1710866952
LMHX01000002
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
32925
33000
+
His
GTG
[ENA]
¡û
>W1710884812
LMWU01000008
Actinomycetota
Streptomyces canus [LMWU]
12555
12480
-
His
GTG
[ENA]
¡û
>W1710945278
LORI01000182
Actinomycetota
Streptomyces sampsonii [LORI]
8742
8815
+
His
GTG
[ENA]
¡û
>W1711282566
LZNS01000001
Actinomycetota
Streptomyces sp. MP131-18 [LZNS]
2553581
2553506
-
His
GTG
[ENA]
¡û
>W1711317104
MAXA01000091
Actinomycetota
Parafrankia soli NRRL B-16219 [MAXA]
53395
53470
+
His
GTG
[ENA]
¡û
>W1711343484
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
4793349
4793276
-
His
GTG
[ENA]
¡û
>W1711343534
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
4796363
4796290
-
His
GTG
[ENA]
¡û
>W1711343558
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
675512
675585
+
His
GTG
[ENA]
¡û
>W1711343642
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3558808
3558735
-
His
GTG
[ENA]
¡û
>W1711343645
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3556896
3556823
-
His
GTG
[ENA]
¡û
>W1711343715
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
267807
267734
-
His
GTG
[ENA]
¡û
>W1711343729
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
2521622
2521695
+
His
GTG
[ENA]
¡û
>W1711343732
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
2523241
2523314
+
His
GTG
[ENA]
¡û
>W1711343804
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2964593
2964520
-
His
GTG
[ENA]
¡û
>W1711343837
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
2533115
2533188
+
His
GTG
[ENA]
¡û
>W1711343840
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
2535177
2535250
+
His
GTG
[ENA]
¡û
>W1711343926
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
1359029
1358956
-
His
GTG
[ENA]
¡û
>W1711343978
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
1078057
1077984
-
His
GTG
[ENA]
¡û
>W1711386145
MEEZ01000009
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
701
773
+
His
GTG
[ENA]
¡û
>W1711386210
MEFA01000237
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
701
773
+
His
GTG
[ENA]
¡û
>W1711427774
MIFY01000009
Actinomycetota
Pseudonocardia autotrophica [MIFY]
13041
13114
+
His
GTG
[ENA]
¡û
>W1711603482
MOMC01000006
Actinomycetota
Pseudofrankia asymbiotica NRRL B-16386 [MOMC]
23359
23434
+
His
GTG
[ENA]
¡û
>W131168567
ARED01000003
Actinomycetota
Streptomyces sp. HmicA12 [ARED]
438494
438567
+
His
GTG
[ENA]
¡û
>W131173465
ARHR01000091
Actinomycetota
Streptomycetaceae bacterium CNQ766 CNQ766 [ARHR]
51171
51244
+
His
GTG
[ENA]
¡û
>W131173508
ARHS01000099
Actinomycetota
Streptomyces sp. CNS335 [ARHS]
51184
51257
+
His
GTG
[ENA]
¡û
>W131173630
ARHU01000070
Actinomycetota
Streptomyces sp. CNY243 [ARHU]
322593
322520
-
His
GTG
[ENA]
¡û
>W131222323
AUBE01000004
Actinomycetota
Streptomyces flavidovirens DSM 40150 [AUBE]
75442
75515
+
His
GTG
[ENA]
¡û
>W131234199
AUKP01000004
Actinomycetota
Streptomyces sp. CNQ865 [AUKP]
316174
316101
-
His
GTG
[ENA]
¡û
>W131011101
AICX01000042
Actinomycetota
Saccharomonospora halophila 8 [AICX]
1540
1615
+
His
GTG
[ENA]
¡û
>W131011186
AICY01000663
Actinomycetota
Saccharomonospora saliphila YIM 90502 [AICY]
13883
13808
-
His
GTG
[ENA]
¡û
>C171051659
CP016824
Actinomycetota
Streptomyces sampsonii KJ40 [CP016824]
2247824
2247897
+
His
GTG
-
¡û
>WENV180033614
FTKL01000451
[FTKL] metagenome; soil
2006
2081
+
His
GTG
[ENA]
¢þ
>WENV180033615
FTKL01000451
[FTKL] metagenome; soil
2436
2511
+
His
GTG
[ENA]
¢þ
>WENV180694239
OCZS012108597
[OCZS] soil metagenome; soil
100
175
+
His
GTG
[ENA]
¢þ
>W141070839
ASHE01000010
Actinomycetota
Streptomyces sp. PVA_94-07 PVA 94-07 [ASHE]
10771
10698
-
His
GTG
[ENA]
¡û
>W08006562
ABJF01000210
Actinomycetota
Streptomyces sp. Mg1 [ABJF]
10294
10221
-
His
GTG
[ENA]
¡û
>W08006602
ABJG01000250
Actinomycetota
Streptomyces sp. SPB074 SPB74 [ABJG]
2616
2689
+
His
GTG
[ENA]
¡û
>W141169402
AXVU01000004
Actinomycetota
Streptomyces sp. CNQ329 [AXVU]
292242
292169
-
His
GTG
[ENA]
¡û
>W141219354
AZWZ01000007
Actinomycetota
Streptomyces sp. CNT371 [AZWZ]
176821
176894
+
His
GTG
[ENA]
¡û
>C181116724
CP025407
Actinomycetota
Streptomyces sp. CMB-StM0423 [CP025407]
5559091
5559164
+
His
GTG
-
¡û
>C191005755
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
1769950
1769877
-
His
GTG
-
¡û
>C191065091
CP029618
Actinomycetota
Streptomyces sp. WAC 06738 [CP029618]
2503553
2503480
-
His
GTG
-
¡û
>W141531080
JHDU01000022
Actinomycetota
Streptomyces wadayamensis [JHDU]
16151
16078
-
His
GTG
[ENA]
¡û
>C191163135
CP039123
Actinomycetota
Streptomyces sp. SS52 [CP039123]
3009964
3010037
+
His
GTG
-
¡û
>W141730158
JNID01000004
Actinomycetota
Streptomyces sp. CNQ-525 [JNID]
182952
182879
-
His
GTG
[ENA]
¡û
>W141756169
JNWZ01000071
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
8470
8395
-
His
GTG
[ENA]
¡û
>W141757861
JNYE01000142
Actinomycetota
Kitasatospora phosalacinea [JNYE]
7952
7877
-
His
GTG
[ENA]
¡û
>W141759456
JNZI01000012
Actinomycetota
Streptomyces albidoflavus subsp. griseus [JNZI]
170879
170952
+
His
GTG
[ENA]
¡û
>W141761936
JOBB01005911
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
241
166
-
His
GTG
[ENA]
¡û
>W141767113
JOEK01000015
Actinomycetota
Streptomyces avicenniae [JOEK]
37268
37343
+
His
GTG
[ENA]
¡û
>W141767550
JOER01000057
Actinomycetota
Kitasatospora aureofaciens [JOER]
27107
27182
+
His
GTG
[ENA]
¡û
>W141769638
JOFY01000005
Actinomycetota
Streptomyces sp. NRRL F-4335 [JOFY]
15344
15271
-
His
GTG
[ENA]
¡û
>W141769640
JOFY01000007
Actinomycetota
Streptomyces sp. NRRL F-4335 [JOFY]
153399
153472
+
His
GTG
[ENA]
¡û
>W141772845
JOIB01000004
Actinomycetota
Streptomyces sp. NRRL F-4474 [JOIB]
15195
15122
-
His
GTG
[ENA]
¡û
>W141772868
JOIB01000019
Actinomycetota
Streptomyces sp. NRRL F-4474 [JOIB]
83073
83000
-
His
GTG
[ENA]
¡û
>W141774566
JOJD01000003
Actinomycetota
Streptomyces sp. NRRL S-98 [JOJD]
67986
67913
-
His
GTG
[ENA]
¡û
>W141774580
JOJD01000013
Actinomycetota
Streptomyces sp. NRRL S-98 [JOJD]
170336
170263
-
His
GTG
[ENA]
¡û
>W141775148
JOJM01000033
Actinomycetota
Streptomyces sp. NRRL B-1347 [JOJM]
62584
62657
+
His
GTG
[ENA]
¡û
>W1910182937
BJNH01000038
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
37505
37432
-
His
GTG
[ENA]
¡û
>W1910547574
FZNW01000020
Actinomycetota
Haloechinothrix alba DSM 45207 [FZNW]
4516
4591
+
His
GTG
[ENA]
¡û
>W1910890086
NEUD01000631
Actinomycetota
Streptomyces sp. SM12 [NEUD]
801
728
-
His
GTG
[ENA]
¡û
>W1911180806
NQOS01000154
Actinomycetota
Streptomyces sp. Alain-F2R5 [NQOS]
17724
17651
-
His
GTG
[ENA]
¡û
>W1911243753
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
5017200
5017125
-
His
GTG
[ENA]
¡û
>W1911278561
NTFT01000241
Actinomycetota
Streptomyces albidoflavus 132 [NTFT]
2496
2569
+
His
GTG
[ENA]
¡û
>W1911385385
NVPX01000230
Actinomycetota
Streptomyces albidoflavus 138 [NVPX]
6304
6231
-
His
GTG
[ENA]
¡û
>W1911591403
PKLK01000025
Actinomycetota
Streptomyces albidoflavus FXJ.2339 [PKLK]
422088
422015
-
His
GTG
[ENA]
¡û
>W1911591478
PKLL01000025
Actinomycetota
Streptomyces albidoflavus NBRC 100770 [PKLL]
309351
309278
-
His
GTG
[ENA]
¡û
>W1911591539
PKLM01000034
Actinomycetota
Streptomyces albidoflavus CGMCC 4.1677 [PKLM]
639784
639711
-
His
GTG
[ENA]
¡û
>W1911591665
PKLO01000040
Actinomycetota
Streptomyces albidoflavus DSM 40455 [PKLO]
123752
123679
-
His
GTG
[ENA]
¡û
>W1911591738
PKLP01000032
Actinomycetota
Streptomyces albidoflavus NBRC 13083 [PKLP]
268210
268137
-
His
GTG
[ENA]
¡û
>W1911592267
PKLX01000019
Actinomycetota
Streptomyces albidoflavus FXJ8.031 [PKLX]
478573
478500
-
His
GTG
[ENA]
¡û
>W1911593036
PKNX01000033
Actinomycetota
Streptomyces albidoflavus CR33 [PKNX]
15372
15299
-
His
GTG
[ENA]
¡û
>W1911652627
QBDS01000001
Actinomycetota
Streptomyces sp. N1 [QBDS]
4853402
4853329
-
His
GTG
[ENA]
¡û
>W1911810871
QYZT01000168
Actinomycetota
Streptomyces alfalfae XY25 [QYZT]
54034
54107
+
His
GTG
[ENA]
¡û
>W1810089712
PGEW01000003
Actinomycetota
Streptomyces sp. CNZ306 [PGEW]
1326865
1326792
-
His
GTG
[ENA]
¡û
>W1810121475
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
4651529
4651456
-
His
GTG
[ENA]
¡û
>W1810149702
PITL01000074
Actinomycetota
Streptomyces sp. EAG2 [PITL]
15490
15563
+
His
GTG
[ENA]
¡û
>C151074985
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
4224036
4224109
+
His
GTG
-
¡û
>C151083204
CP011492
Actinomycetota
Streptomyces sp. CNQ-509 [CP011492]
2508109
2508036
-
His
GTG
[Ensembl]
¡û
>C151086032
CP011664
Actinomycetota
Streptomyces sp. Mg1 [CP011664]
3161979
3162052
+
His
GTG
[Ensembl]
¡û
>C151086066
CP011664
Actinomycetota
Streptomyces sp. Mg1 [CP011664]
6126970
6126897
-
His
GTG
[Ensembl]
¡û
>C151087157
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4921864
4921791
-
His
GTG
-
¡û
>C151087221
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
972468
972395
-
His
GTG
-
¡û
>W10118400
ADUJ01000272
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
3138
3065
-
His
GTG
[ENA]
¡û
>W10128150
AEGE01001067
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
7626
7553
-
His
GTG
[ENA]
¡û
>W11123475
ADUJ01000272
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
3138
3065
-
His
GTG
[ENA]
¡û
>W11136848
AEGE01001067
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
7626
7553
-
His
GTG
[ENA]
¡û
>W1511529051
JYJF01000011
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
26016
26091
+
His
GTG
[ENA]
¡û
>W1511545273
JZKH01000093
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
14887
14962
+
His
GTG
[ENA]
¡û
>W1511584450
LAVK01000235
Actinomycetota
Streptomyces sp. SBT349 [LAVK]
185
110
-
His
GTG
[ENA]
¡û
>W1511585908
LAYX01000012
Actinomycetota
Streptomyces sp. KE1 [LAYX]
127808
127881
+
His
GTG
[ENA]
¡û
>W1511687940
LFVW01001088
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
1008
1083
+
His
GTG
[ENA]
¡û
>W1511696089
LGDE01000001
Actinomycetota
Streptomyces sp. WM4235 [LGDE]
38023
37950
-
His
GTG
[ENA]
¡û
>W1511696146
LGDE01000469
Actinomycetota
Streptomyces sp. WM4235 [LGDE]
123952
123879
-
His
GTG
[ENA]
¡û
>W1511707126
LGUV01000365
Actinomycetota
Streptomyces virginiae NRRL B-1447 [LGUV]
15563
15490
-
His
GTG
[ENA]
¡û
>W1511707137
LGUV01000381
Actinomycetota
Streptomyces virginiae NRRL B-1447 [LGUV]
27462
27535
+
His
GTG
[ENA]
¡û
>W11178166
AGDC01000414
Actinomycetota
Streptomyces lysosuperificus ATCC 31396 [AGDC]
4514
4587
+
His
GTG
[ENA]
¡û
>C161022218
CP009802
Actinomycetota
Streptomyces sp. FR-008 [CP009802]
4928679
4928606
-
His
GTG
[Ensembl]
¡û
>C161040339
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
5856278
5856351
+
His
GTG
-
¡û
>C161040374
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
1424303
1424376
+
His
GTG
[Ensembl]
¡û
>C161061300
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
4035547
4035474
-
His
GTG
[Ensembl]
¡û
>W121011588
AGNH01000124
Actinomycetota
Streptomyces sp. TOR3209 [AGNH]
490
563
+
His
GTG
[ENA]
¡û
>W1610722649
LMCT01000045
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
223769
223694
-
His
GTG
[ENA]
¡û
>W1610729298
LMHX01000002
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
32925
33000
+
His
GTG
[ENA]
¡û
>W1610746738
LMWU01000008
Actinomycetota
Streptomyces canus [LMWU]
12555
12480
-
His
GTG
[ENA]
¡û
>W1710502296
FMCI01000330
Actinomycetota
Streptomyces sp. SolWspMP-5a-2 [FMCI]
24991
25064
+
His
GTG
[ENA]
¡û
>W1710576486
FPAB01000005
Actinomycetota
Streptomyces harbinensis [FPAB]
258727
258800
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK