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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235627 (73 seq.)
>W1711343485
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
4793176
4793101
-
Lys
CTT
[ENA]
¡û
>W1711343535
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
4796190
4796115
-
Lys
CTT
[ENA]
¡û
>W1711343559
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
675685
675760
+
Lys
CTT
[ENA]
¡û
>W1711343643
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3558686
3558613
-
Lys
CTT
[ENA]
¡û
>W1711343644
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3558589
3558514
-
Lys
CTT
[ENA]
¡û
>W1711343646
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3556774
3556701
-
Lys
CTT
[ENA]
¡û
>W1711343647
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3556677
3556602
-
Lys
CTT
[ENA]
¡û
>W1711343648
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3554473
3554398
-
Lys
CTT
[ENA]
¡û
>W1711343716
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
267634
267559
-
Lys
CTT
[ENA]
¡û
>W1711343730
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
2521744
2521817
+
Lys
CTT
[ENA]
¡û
>W1711343731
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
2521841
2521916
+
Lys
CTT
[ENA]
¡û
>W1711343733
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
2523363
2523436
+
Lys
CTT
[ENA]
¡û
>W1711343734
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
2523460
2523535
+
Lys
CTT
[ENA]
¡û
>W1711343805
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2964471
2964398
-
Lys
CTT
[ENA]
¡û
>W1711343806
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2964374
2964299
-
Lys
CTT
[ENA]
¡û
>W1711343838
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
2533237
2533310
+
Lys
CTT
[ENA]
¡û
>W1711343839
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
2533334
2533409
+
Lys
CTT
[ENA]
¡û
>W1711343841
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
2535299
2535372
+
Lys
CTT
[ENA]
¡û
>W1711343842
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
2535396
2535471
+
Lys
CTT
[ENA]
¡û
>W1711343927
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
1358856
1358781
-
Lys
CTT
[ENA]
¡û
>W1711343979
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
1077935
1077862
-
Lys
CTT
[ENA]
¡û
>W1711343980
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
1077838
1077763
-
Lys
CTT
[ENA]
¡û
>W1711386146
MEEZ01000009
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
837
912
+
Lys
CTT
[ENA]
¡û
>W1711386211
MEFA01000237
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
858
933
+
Lys
CTT
[ENA]
¡û
>W1711387109
MEGH01000003
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
101655
101730
+
Lys
CTT
[ENA]
¡û
>W1711427775
MIFY01000009
Actinomycetota
Pseudonocardia autotrophica [MIFY]
13195
13268
+
Lys
CTT
[ENA]
¡û
>W1711427776
MIFY01000009
Actinomycetota
Pseudonocardia autotrophica [MIFY]
13291
13366
+
Lys
CTT
[ENA]
¡û
>W1711427958
MIGB01000018
Actinomycetota
Pseudonocardia autotrophica [MIGB]
64967
65040
+
Lys
CTT
[ENA]
¡û
>W1711427959
MIGB01000018
Actinomycetota
Pseudonocardia autotrophica [MIGB]
65063
65138
+
Lys
CTT
[ENA]
¡û
>W131164601
ARAX01000005
Actinomycetota
Sciscionella marina DSM 45152 [ARAX]
122923
122850
-
Lys
CTT
[ENA]
¡û
>WENV180193767
OAZW01007680
[OAZW] human gut metagenome; faeces
778
705
-
Lys
CTT
[ENA]
¢þ
>WENV180595643
OCPE01036353
[OCPE] marine metagenome; ENVO.00002150
76
149
+
Lys
CTT
[ENA]
¢þ
>W141200899
AZAK01000005
Actinomycetota
Haloechinothrix halophila YIM 93223 [AZAK]
1008797
1008870
+
Lys
CTT
[ENA]
¡û
>WENV182406556
OIFA01000007
[OIFA] human gut metagenome; stool
209894
209821
-
Lys
CTT
[ENA]
¢þ
>WENV182815269
OJYQ01000028
[OJYQ] human gut metagenome; human gut
645
572
-
Lys
CTT
[ENA]
¢þ
>WENV182842609
OKIF01000126
[OKIF] human gut metagenome; human gut
21651
21576
-
Lys
CTT
[ENA]
¢þ
>WENV182842610
OKIF01000126
[OKIF] human gut metagenome; human gut
16186
16113
-
Lys
CTT
[ENA]
¢þ
>WENV182859057
OKOL01000007
[OKOL] human gut metagenome; human gut
40428
40353
-
Lys
CTT
[ENA]
¢þ
>WENV182859058
OKOL01000007
[OKOL] human gut metagenome; human gut
40340
40267
-
Lys
CTT
[ENA]
¢þ
>W141284054
JALM01000033
Actinomycetota
Sciscionella sp. SE31 [JALM]
14193
14120
-
Lys
CTT
[ENA]
¡û
>C191005756
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
1769785
1769712
-
Lys
CTT
-
¡û
>C191005757
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
1769689
1769614
-
Lys
CTT
-
¡û
>W09109974
ABUS01000004
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [ABUS]
451869
451794
-
Lys
CTT
[ENA]
¡û
>W141750803
JNSE01000017
Actinomycetota
actinobacterium acAMD-2 [JNSE]
14287
14362
+
Lys
CTT
[ENA]
¡û
>W1910038417
BEGX01000052
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
107967
108042
+
Lys
CTT
[ENA]
¡û
>W1910182876
BJNG01000012
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
63656
63581
-
Lys
CTT
[ENA]
¡û
>W1910182938
BJNH01000038
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
37340
37265
-
Lys
CTT
[ENA]
¡û
>W1910237225
FPKP01000003
Actinomycetota
Actinomyces urinae FC2 Marseille-P2225 [FPKP]
536190
536265
+
Lys
CTT
[ENA]
¡û
>W1910237226
FPKP01000003
Actinomycetota
Actinomyces urinae FC2 Marseille-P2225 [FPKP]
541653
541726
+
Lys
CTT
[ENA]
¡û
>W1910994787
NKYE01000003
Actinomycetota
Amycolatopsis antarctica AU-G6 [NKYE]
101306
101232
-
Lys
CTT
[ENA]
¡û
>W1810121476
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
4651375
4651302
-
Lys
CTT
[ENA]
¡û
>W1810121477
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
4651279
4651205
-
Lys
CTT
[ENA]
¡û
>C151074986
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
4224209
4224284
+
Lys
CTT
-
¡û
>C151087158
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4921710
4921637
-
Lys
CTT
-
¡û
>C151087159
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4921614
4921539
-
Lys
CTT
-
¡û
>C151087222
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
972346
972273
-
Lys
CTT
-
¡û
>W10118401
ADUJ01000272
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2965
2890
-
Lys
CTT
[ENA]
¡û
>W10128151
AEGE01001067
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
7504
7431
-
Lys
CTT
[ENA]
¡û
>W10128152
AEGE01001067
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
7407
7332
-
Lys
CTT
[ENA]
¡û
>C10112150
CP001778
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [CP001778]
2358544
2358619
+
Lys
CTT
[Ensembl]
¡û
>W11123476
ADUJ01000272
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
2965
2890
-
Lys
CTT
[ENA]
¡û
>W11136849
AEGE01001067
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
7504
7431
-
Lys
CTT
[ENA]
¡û
>W11136850
AEGE01001067
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
7407
7332
-
Lys
CTT
[ENA]
¡û
>C161040340
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
5856451
5856526
+
Lys
CTT
-
¡û
>C161040375
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
1424476
1424551
+
Lys
CTT
[Ensembl]
¡û
>C161061301
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
4035393
4035320
-
Lys
CTT
[Ensembl]
¡û
>C161061302
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
4035300
4035227
-
Lys
CTT
[Ensembl]
¡û
>W1610050384
BBFU01000819
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
563
488
-
Lys
CTT
[ENA]
¡û
>W1610051178
BBGP01000421
Actinomycetota
Pseudonocardia chloroethenivorans JCM 12679 [BBGP]
338
265
-
Lys
CTT
[ENA]
¡û
>W1710046783
BBFU01000819
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
563
488
-
Lys
CTT
[ENA]
¡û
>W1710047577
BBGP01000421
Actinomycetota
Pseudonocardia chloroethenivorans JCM 12679 [BBGP]
338
265
-
Lys
CTT
[ENA]
¡û
>W1710570155
FOUY01000021
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
52709
52784
+
Lys
CTT
[ENA]
¡û
>W1710584747
FQVU01000004
Actinomycetota
Jatrophihabitans endophyticus [FQVU]
178214
178141
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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