This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235640 (98 seq.)
>W1711046923
LROR01000050
Bacillota
Clostridium coskatii [LROR]
96209
96134
-
Ala
TGC
[ENA]
¡û
>W1711046953
LROR01000110
Bacillota
Clostridium coskatii [LROR]
388
463
+
Ala
TGC
[ENA]
¡û
>W1711046985
LROS01000022
Bacillota
Clostridium ragsdalei P11 [LROS]
320168
320093
-
Ala
TGC
[ENA]
¡û
>W1711047003
LROS01000053
Bacillota
Clostridium ragsdalei P11 [LROS]
1330
1255
-
Ala
TGC
[ENA]
¡û
>W131082846
ANZB01000017
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
49523
49598
+
Ala
TGC
[ENA]
¡û
>W131082850
ANZB01000017
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
68801
68876
+
Ala
TGC
[ENA]
¡û
>W131203909
ASZX01000046
Bacillota
Clostridium autoethanogenum DSM 10061 [ASZX]
17587
17512
-
Ala
TGC
[ENA]
¡û
>C171019427
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
14722
14797
+
Ala
TGC
-
¡û
>C171019489
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
3978216
3978141
-
Ala
TGC
-
¡û
>C171019490
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
3975816
3975741
-
Ala
TGC
-
¡û
>C171019506
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
14722
14797
+
Ala
TGC
-
¡û
>C171019568
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
3977227
3977152
-
Ala
TGC
-
¡û
>C171019569
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
3974827
3974752
-
Ala
TGC
-
¡û
>C171077642
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
14594
14669
+
Ala
TGC
-
¡û
>C171077664
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
271139
271214
+
Ala
TGC
-
¡û
>w025888
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2157234
2157311
+
Ala
TGC
[ENA]
¡û
>w025866
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
1994333
1994410
+
Ala
TGC
[ENA]
¡û
>WENV180042540
LQAF01002977
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
400
325
-
Ala
TGC
[ENA]
¢þ
>WENV180043331
LQAH01029703
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
96
171
+
Ala
TGC
[ENA]
¢þ
>C08003341
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
14574
14649
+
Ala
TGC
[Ensembl]
¡û
>C08003363
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
177475
177550
+
Ala
TGC
[Ensembl]
¡û
>WENV170687573
LFRM01199775
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2958
2883
-
Ala
TGC
[ENA]
¢þ
>C181047798
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
273126
273201
+
Ala
TGC
-
¡û
>C181047807
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
5476963
5477038
+
Ala
TGC
-
¡û
>C181047840
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
5333248
5333173
-
Ala
TGC
-
¡û
>C191065519
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
652306
652381
+
Ala
TGC
-
¡û
>C191065522
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
686061
686136
+
Ala
TGC
-
¡û
>C191065547
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
4372302
4372227
-
Ala
TGC
-
¡û
>C191089272
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
14415
14490
+
Ala
TGC
-
¡û
>C191089288
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
224010
224085
+
Ala
TGC
-
¡û
>C191089289
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
225957
226032
+
Ala
TGC
-
¡û
>C191089345
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
2458595
2458520
-
Ala
TGC
-
¡û
>C191106388
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
14478
14553
+
Ala
TGC
-
¡û
>C191106403
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
376730
376805
+
Ala
TGC
-
¡û
>C191106425
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2611166
2611091
-
Ala
TGC
-
¡û
>W141565615
JIBU02000062
Bacillota
Clostridium drakei [JIBU]
216
291
+
Ala
TGC
[ENA]
¡û
>W141565630
JIBU02000110
Bacillota
Clostridium drakei [JIBU]
142
217
+
Ala
TGC
[ENA]
¡û
>W141569559
JIDX01000050
Bacillota
Clostridium scatologenes [JIDX]
57385
57310
-
Ala
TGC
[ENA]
¡û
>W141569585
JIDX01000111
Bacillota
Clostridium scatologenes [JIDX]
912
837
-
Ala
TGC
[ENA]
¡û
>W141569608
JIDX01000172
Bacillota
Clostridium scatologenes [JIDX]
492
417
-
Ala
TGC
[ENA]
¡û
>W141702357
JMLK01000039
Bacillota
Clostridium akagii DSM 12554 [JMLK]
186
111
-
Ala
TGC
[ENA]
¡û
>W141803760
JPGY01000005
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
5705
5780
+
Ala
TGC
[ENA]
¡û
>W141803761
JPGY01000005
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
8101
8176
+
Ala
TGC
[ENA]
¡û
>W141803817
JPGY01000010
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
434994
435069
+
Ala
TGC
[ENA]
¡û
>W141803822
JPGY01000010
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
45637
45562
-
Ala
TGC
[ENA]
¡û
>W141803831
JPGY01000011
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
1333
1408
+
Ala
TGC
[ENA]
¡û
>W141803832
JPGY01000011
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
3733
3808
+
Ala
TGC
[ENA]
¡û
>W09135132
ACVI01000195
Bacillota
Clostridium carboxidivorans P7 [ACVI]
83
158
+
Ala
TGC
[ENA]
¡û
>W141822337
JQOK01000003
Bacillota
Clostridium botulinum [JQOK]
199
124
-
Ala
TGC
[ENA]
¡û
>C09103254
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
14574
14649
+
Ala
TGC
[Ensembl]
¡û
>C09103276
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
177475
177550
+
Ala
TGC
[Ensembl]
¡û
>C141008100
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
2936973
2937048
+
Ala
TGC
[Ensembl]
¡û
>C141008103
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
2968779
2968854
+
Ala
TGC
[Ensembl]
¡û
>C141008120
CP006763
Bacillota
Clostridium autoethanogenum DSM 10061 [CP006763]
2113806
2113731
-
Ala
TGC
[Ensembl]
¡û
>W1810367523
PVXP01000002
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
557
632
+
Ala
TGC
[ENA]
¡û
>W1810367565
PVXP01000081
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
697
772
+
Ala
TGC
[ENA]
¡û
>W1810367572
PVXP01000161
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
156
231
+
Ala
TGC
[ENA]
¡û
>C151047003
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
14722
14797
+
Ala
TGC
[Ensembl]
¡û
>C151047065
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
3977256
3977181
-
Ala
TGC
[Ensembl]
¡û
>C151047066
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
3974856
3974781
-
Ala
TGC
[Ensembl]
¡û
>C151047082
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
14722
14797
+
Ala
TGC
[Ensembl]
¡û
>C151047144
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
3977464
3977389
-
Ala
TGC
[Ensembl]
¡û
>C151047145
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
3975064
3974989
-
Ala
TGC
[Ensembl]
¡û
>C151062267
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
4590769
4590844
+
Ala
TGC
[Ensembl]
¡û
>C151062296
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
4444613
4444538
-
Ala
TGC
[Ensembl]
¡û
>C151062312
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
3960969
3960894
-
Ala
TGC
[Ensembl]
¡û
>C151086633
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4627053
4627128
+
Ala
TGC
[Ensembl]
¡û
>C151086649
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
5065578
5065653
+
Ala
TGC
[Ensembl]
¡û
>C10103564
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
688495
688570
+
Ala
TGC
[Ensembl]
¡û
>C10103567
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
719795
719870
+
Ala
TGC
[Ensembl]
¡û
>C10103591
CP001666
Bacillota
Clostridium ljungdahlii DSM 13528 [CP001666]
4481153
4481078
-
Ala
TGC
[Ensembl]
¡û
>W11115439
ADEK01000046
Bacillota
Clostridium carboxidivorans P7 [ADEK]
85
160
+
Ala
TGC
[ENA]
¡û
>C161041762
CP012395
Bacillota
Clostridium autoethanogenum DSM 10061 [CP012395]
2937148
2937223
+
Ala
TGC
-
¡û
>C161041765
CP012395
Bacillota
Clostridium autoethanogenum DSM 10061 [CP012395]
2968957
2969032
+
Ala
TGC
-
¡û
>C161041782
CP012395
Bacillota
Clostridium autoethanogenum DSM 10061 [CP012395]
2113923
2113848
-
Ala
TGC
-
¡û
>C131002487
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
14927
15002
+
Ala
TGC
[Ensembl]
¡û
>C131002542
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
4616465
4616390
-
Ala
TGC
[Ensembl]
¡û
>W1610635654
LITQ01000001
Bacillota
Clostridium coskatii [LITQ]
430
505
+
Ala
TGC
[ENA]
¡û
>W1610635721
LITQ01000078
Bacillota
Clostridium coskatii [LITQ]
560
635
+
Ala
TGC
[ENA]
¡û
>W1610635785
LITS01000034
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
18461
18386
-
Ala
TGC
[ENA]
¡û
>W1610635791
LITS01000048
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
627
552
-
Ala
TGC
[ENA]
¡û
>W1610635841
LITT01000047
Bacillota
Clostridium ljungdahlii [LITT]
1433
1358
-
Ala
TGC
[ENA]
¡û
>W1610635843
LITT01000053
Bacillota
Clostridium ljungdahlii [LITT]
919
844
-
Ala
TGC
[ENA]
¡û
>W1610888052
LROR01000050
Bacillota
Clostridium coskatii [LROR]
96209
96134
-
Ala
TGC
[ENA]
¡û
>W1610888082
LROR01000110
Bacillota
Clostridium coskatii [LROR]
388
463
+
Ala
TGC
[ENA]
¡û
>W1610888114
LROS01000022
Bacillota
Clostridium ragsdalei P11 [LROS]
320168
320093
-
Ala
TGC
[ENA]
¡û
>W1610888132
LROS01000053
Bacillota
Clostridium ragsdalei P11 [LROS]
1330
1255
-
Ala
TGC
[ENA]
¡û
>W1710605751
FWXH01000017
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
67877
67802
-
Ala
TGC
[ENA]
¡û
>W1710731242
LFYL01000002
Bacillota
Clostridium pasteurianum [LFYL]
1800169
1800244
+
Ala
TGC
[ENA]
¡û
>W1710731261
LFYL01000002
Bacillota
Clostridium pasteurianum [LFYL]
1418356
1418281
-
Ala
TGC
[ENA]
¡û
>W1710770362
LITQ01000001
Bacillota
Clostridium coskatii [LITQ]
430
505
+
Ala
TGC
[ENA]
¡û
>W1710770429
LITQ01000078
Bacillota
Clostridium coskatii [LITQ]
560
635
+
Ala
TGC
[ENA]
¡û
>W1710770480
LITR01000013
Bacillota
Clostridium autoethanogenum [LITR]
149535
149460
-
Ala
TGC
[ENA]
¡û
>W1710770494
LITR01000027
Bacillota
Clostridium autoethanogenum [LITR]
331
406
+
Ala
TGC
[ENA]
¡û
>W1710770558
LITS01000034
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
18461
18386
-
Ala
TGC
[ENA]
¡û
>W1710770564
LITS01000048
Bacillota
Clostridium ljungdahlii DSM 13528 [LITS]
627
552
-
Ala
TGC
[ENA]
¡û
>W1710770614
LITT01000047
Bacillota
Clostridium ljungdahlii [LITT]
1433
1358
-
Ala
TGC
[ENA]
¡û
>W1710770616
LITT01000053
Bacillota
Clostridium ljungdahlii [LITT]
919
844
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK