This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235648 (127 seq.)
>W1710778378
LJCW01000330
Actinomycetota
Actinobacteria bacterium OV450 [LJCW]
30398
30325
-
Glu
TTC
[ENA]
¡û
>W1710862402
LMEI01000013
Actinomycetota
Streptomyces sp. Root431 [LMEI]
754619
754546
-
Glu
TTC
[ENA]
¡û
>W1710862772
LMEP01000024
Actinomycetota
Streptomyces sp. Root1304 [LMEP]
45976
46049
+
Glu
TTC
[ENA]
¡û
>W1710866182
LMHG01000031
Actinomycetota
Streptomyces sp. Root66D1 [LMHG]
46262
46335
+
Glu
TTC
[ENA]
¡û
>W1711019626
LQYB01000024
Actinomycetota
Streptomyces sp. IMTB 1903 [LQYB]
33570
33643
+
Glu
TTC
[ENA]
¡û
>W1711183603
LWLD01000025
Actinomycetota
Streptomyces sp. CB03578 [LWLD]
31504
31431
-
Glu
TTC
[ENA]
¡û
>W1711388237
MEHK01000001
Actinomycetota
Streptomyces subrutilus [MEHK]
3981624
3981551
-
Glu
TTC
[ENA]
¡û
>W1711662819
MQUR01000110
Actinomycetota
Streptomyces amritsarensis [MQUR]
15344
15271
-
Glu
TTC
[ENA]
¡û
>W131204968
ATCJ01000005
Actinomycetota
Streptomyces sp. Mg1 [ATCJ]
3955032
3955105
+
Glu
TTC
[ENA]
¡û
>C171085725
CP018870
Actinomycetota
Streptomyces sp. TN58 [CP018870]
4127667
4127594
-
Glu
TTC
-
¡û
>C171100054
CP019798
Actinomycetota
Streptomyces sp. fd1-xmd [CP019798]
3937694
3937767
+
Glu
TTC
-
¡û
>C171103139
CP020039
Actinomycetota
Streptomyces sp. 3211 [CP020039]
3984989
3985062
+
Glu
TTC
-
¡û
>C171109070
CP020555
Actinomycetota
Streptomyces sp. Sge12 [CP020555]
4253125
4253052
-
Glu
TTC
-
¡û
>WENV180028516
FTJE01000675
[FTJE] metagenome; soil
1633
1560
-
Glu
TTC
[ENA]
¢þ
>W141026654
AKXV01000008
Actinomycetota
Streptomyces sp. SS [AKXV]
208827
208754
-
Glu
TTC
[ENA]
¡û
>WENV181163688
OEIQ01183219
[OEIQ] soil metagenome; soil
103
176
+
Glu
TTC
[ENA]
¢þ
>W141214337
AZSS01000042
Actinomycetota
Streptomyces exfoliatus DSM 41693 [AZSS]
10115
10188
+
Glu
TTC
[ENA]
¡û
>W141402046
JDUZ01000003
Actinomycetota
Streptomyces sp. PCS3-D2 [JDUZ]
32581
32654
+
Glu
TTC
[ENA]
¡û
>C181109893
CP024985
Actinomycetota
Streptomyces lavendulae subsp. lavendulae CCM 3239 [CP024985]
4161696
4161769
+
Glu
TTC
-
¡û
>C181193546
CP030862
Actinomycetota
Streptomyces globosus LZH-48 [CP030862]
6670758
6670831
+
Glu
TTC
-
¡û
>C191108167
CP033581
Actinomycetota
Streptomyces sp. ADI95-16 [CP033581]
4037914
4037987
+
Glu
TTC
-
¡û
>C191123632
CP034350
Actinomycetota
Streptomyces sp. W1SF4 [CP034350]
3941754
3941681
-
Glu
TTC
-
¡û
>W09120802
ACEW01000334
Actinomycetota
Streptomyces sp. C [ACEW]
2107
2034
-
Glu
TTC
[ENA]
¡û
>W141755192
JNWK01000049
Actinomycetota
Streptomyces wedmorensis [JNWK]
45016
45089
+
Glu
TTC
[ENA]
¡û
>W141756089
JNWY01000050
Actinomycetota
Kitasatospora setae [JNWY]
90276
90203
-
Glu
TTC
[ENA]
¡û
>W141756171
JNWZ01000100
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
13486
13413
-
Glu
TTC
[ENA]
¡û
>W141756910
JNXL01000918
Actinomycetota
Streptomyces lavendulae [JNXL]
381
308
-
Glu
TTC
[ENA]
¡û
>W141757414
JNXV01000811
Actinomycetota
Streptomyces flavotricini [JNXV]
1999
1926
-
Glu
TTC
[ENA]
¡û
>W141757716
JNYC01000023
Actinomycetota
Streptomyces virginiae [JNYC]
90941
90868
-
Glu
TTC
[ENA]
¡û
>W141757827
JNYE01000017
Actinomycetota
Kitasatospora phosalacinea [JNYE]
151
224
+
Glu
TTC
[ENA]
¡û
>W141759225
JNZE01000589
Actinomycetota
Streptomyces lavendulae subsp. lavendulae [JNZE]
590
663
+
Glu
TTC
[ENA]
¡û
>W141759304
JNZG01000001
Actinomycetota
Streptomyces erythrochromogenes [JNZG]
345893
345820
-
Glu
TTC
[ENA]
¡û
>W141759394
JNZH01000019
Actinomycetota
Streptomyces xanthophaeus [JNZH]
198928
198855
-
Glu
TTC
[ENA]
¡û
>W141759780
JNZP01000005
Actinomycetota
Streptomyces exfoliatus [JNZP]
40573
40646
+
Glu
TTC
[ENA]
¡û
>W141760277
JNZY01000003
Actinomycetota
Streptomyces katrae [JNZY]
36794
36867
+
Glu
TTC
[ENA]
¡û
>W141760952
JOAK01000001
Actinomycetota
Streptomyces virginiae [JOAK]
14295
14368
+
Glu
TTC
[ENA]
¡û
>W141761584
JOAV01001309
Actinomycetota
Streptomyces sp. NRRL S-50 [JOAV]
8989
8916
-
Glu
TTC
[ENA]
¡û
>W141762123
JOBE01000061
Actinomycetota
Streptomyces griseoluteus [JOBE]
28602
28675
+
Glu
TTC
[ENA]
¡û
>W141762394
JOBJ01000271
Actinomycetota
Streptomyces sp. NRRL S-149 [JOBJ]
920
993
+
Glu
TTC
[ENA]
¡û
>W141762463
JOBK01002101
Actinomycetota
Streptomyces sp. NRRL S-20 [JOBK]
4081
4154
+
Glu
TTC
[ENA]
¡û
>W141763000
JOBU01000001
Actinomycetota
Streptomyces lavendulae subsp. lavendulae [JOBU]
505969
505896
-
Glu
TTC
[ENA]
¡û
>W141763193
JOBX01000001
Actinomycetota
Streptomyces sp. NRRL S-378 [JOBX]
360211
360138
-
Glu
TTC
[ENA]
¡û
>W141764770
JOCX01000021
Actinomycetota
Streptomyces sp. NRRL S-244 [JOCX]
65048
65121
+
Glu
TTC
[ENA]
¡û
>W141764865
JOCY01000056
Actinomycetota
Streptomyces sp. NRRL S-241 [JOCY]
31955
31882
-
Glu
TTC
[ENA]
¡û
>W141764883
JOCZ01000492
Actinomycetota
Streptomyces sp. NRRL S-448 [JOCZ]
215
288
+
Glu
TTC
[ENA]
¡û
>W141764964
JODA01000028
Actinomycetota
Streptomyces sp. NRRL S-237 [JODA]
94164
94091
-
Glu
TTC
[ENA]
¡û
>W141765191
JODE01000057
Actinomycetota
Streptomyces sp. NRRL S-515 [JODE]
21863
21936
+
Glu
TTC
[ENA]
¡û
>W141765478
JODJ01000035
Actinomycetota
Streptomyces sp. NRRL S-575 [JODJ]
21887
21960
+
Glu
TTC
[ENA]
¡û
>W141766936
JOEH01000017
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
105053
104980
-
Glu
TTC
[ENA]
¡û
>W141767823
JOEW01000002
Actinomycetota
Streptomyces lavendulae subsp. lavendulae [JOEW]
384246
384173
-
Glu
TTC
[ENA]
¡û
>W141768153
JOFB01000008
Actinomycetota
Streptomyces exfoliatus [JOFB]
40587
40660
+
Glu
TTC
[ENA]
¡û
>W141769321
JOFT01000014
Actinomycetota
Streptomyces xanthophaeus [JOFT]
358391
358318
-
Glu
TTC
[ENA]
¡û
>W141769559
JOFX01000004
Actinomycetota
Streptomyces sp. NRRL F-2664 [JOFX]
294164
294091
-
Glu
TTC
[ENA]
¡û
>W141769620
JOFY01000001
Actinomycetota
Streptomyces sp. NRRL F-4335 [JOFY]
561103
561030
-
Glu
TTC
[ENA]
¡û
>W141770171
JOGH01000016
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
10196
10269
+
Glu
TTC
[ENA]
¡û
>W141771549
JOHF01000059
Actinomycetota
Streptomyces sp. NRRL B-1322 [JOHF]
33520
33447
-
Glu
TTC
[ENA]
¡û
>W141771793
JOHK01000328
Actinomycetota
Streptomyces sp. NRRL B-2375 [JOHK]
114
41
-
Glu
TTC
[ENA]
¡û
>W141772825
JOIB01000002
Actinomycetota
Streptomyces sp. NRRL F-4474 [JOIB]
433334
433261
-
Glu
TTC
[ENA]
¡û
>W141773757
JOIR01000004
Actinomycetota
Streptomyces sp. NRRL F-2580 [JOIR]
261730
261657
-
Glu
TTC
[ENA]
¡û
>W141773814
JOIS01000003
Actinomycetota
Streptomyces sp. NRRL F-2747 [JOIS]
330009
329936
-
Glu
TTC
[ENA]
¡û
>W141774384
JOJA01000052
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
1390
1463
+
Glu
TTC
[ENA]
¡û
>W141774537
JOJD01000001
Actinomycetota
Streptomyces sp. NRRL S-98 [JOJD]
35372
35445
+
Glu
TTC
[ENA]
¡û
>W141819748
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
4617754
4617827
+
Glu
TTC
[ENA]
¡û
>W1910179318
BJHW01000001
Actinomycetota
Streptomyces violaceusniger NBRC 13459 [BJHW]
6296903
6296828
-
Glu
TTC
[ENA]
¡û
>W1910182033
BJMN01000055
Actinomycetota
Streptomyces gardneri NBRC 12865 [BJMN]
53500
53427
-
Glu
TTC
[ENA]
¡û
>C141004763
CP006272
Actinomycetota
Actinoplanes friuliensis DSM 7358 [CP006272]
182174
182101
-
Glu
TTC
[Ensembl]
¡û
>W1911083618
NNBM01000024
Actinomycetota
Streptomyces sp. CB02120-2 [NNBM]
31854
31781
-
Glu
TTC
[ENA]
¡û
>W1911083735
NNBO01000015
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
140560
140633
+
Glu
TTC
[ENA]
¡û
>W1911676721
QHHV01000228
Actinomycetota
Actinoplanes sp. ATCC 53533 [QHHV]
804
731
-
Glu
TTC
[ENA]
¡û
>W1911766151
QXDI01000001
Actinomycetota
Streptomyces sp. 3211.1 [QXDI]
4339848
4339775
-
Glu
TTC
[ENA]
¡û
>W1810072954
PEFP01000001
Actinomycetota
Streptomyces sp. 61 [PEFP]
4105143
4105070
-
Glu
TTC
[ENA]
¡û
>W1810073025
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
4146864
4146791
-
Glu
TTC
[ENA]
¡û
>W1810120737
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
3827484
3827557
+
Glu
TTC
[ENA]
¡û
>W1810120988
PHUB01000001
Actinomycetota
Streptomyces sp. Ag109_G2-1 [PHUB]
3667924
3667997
+
Glu
TTC
[ENA]
¡û
>W1810172078
PJME01000064
Actinomycetota
Streptomyces geranii A301 [PJME]
25642
25569
-
Glu
TTC
[ENA]
¡û
>W1810597037
QGGZ01000003
Actinomycetota
Streptomyces sp. CG 926 [QGGZ]
708836
708763
-
Glu
TTC
[ENA]
¡û
>W1810694010
QLLT01000016
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
109683
109756
+
Glu
TTC
[ENA]
¡û
>C151050226
CP009407
Actinomycetota
Mycobacteroides abscessus [CP009407]
764033
764106
+
Glu
TTC
[Ensembl]
¡û
>C151052932
CP009495
Actinomycetota
Mycolicibacterium smegmatis INHR1 [CP009495]
5834499
5834426
-
Glu
TTC
[Ensembl]
¡û
>C151061840
CP009914
Actinomycetota
Mycobacterium sp. VKM Ac-1817D [CP009914]
1201392
1201465
+
Glu
TTC
[Ensembl]
¡û
>C151086040
CP011664
Actinomycetota
Streptomyces sp. Mg1 [CP011664]
3963512
3963585
+
Glu
TTC
[Ensembl]
¡û
>W1510013966
BBPL01000021
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
118505
118432
-
Glu
TTC
[ENA]
¡û
>W1510014051
BBPM01000092
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
5786
5713
-
Glu
TTC
[ENA]
¡û
>C11111767
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
4641182
4641109
-
Glu
TTC
[Ensembl]
¡û
>W1511498934
JWZS01001282
Actinomycetota
Streptomyces sp. RSD-27 [JWZS]
2059
1986
-
Glu
TTC
[ENA]
¡û
>W1511519311
JXZB01000004
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
2494772
2494699
-
Glu
TTC
[ENA]
¡û
>W1511529251
JYJI01000003
Actinomycetota
Streptomyces sp. NRRL F-4428 [JYJI]
73504
73431
-
Glu
TTC
[ENA]
¡û
>W1511555485
JZWV01000135
Actinomycetota
Streptomyces katrae NRRL ISP-5550 [JZWV]
18433
18360
-
Glu
TTC
[ENA]
¡û
>W1511555553
JZWW01000214
Actinomycetota
Streptomyces sp. NRRL S-104 [JZWW]
3962
4035
+
Glu
TTC
[ENA]
¡û
>W1511555605
JZWX01001831
Actinomycetota
Streptomyces sp. NRRL S-444 [JZWX]
134
61
-
Glu
TTC
[ENA]
¡û
>W1511595071
LBMK01000003
Actinomycetota
Streptomyces yangpuensis fd2-tb [LBMK]
61027
61100
+
Glu
TTC
[ENA]
¡û
>W1511684137
LFML01000052
Actinomycetota
Streptomyces roseus ATCC 31245 [LFML]
27963
27890
-
Glu
TTC
[ENA]
¡û
>W1511695751
LGCZ01000001
Actinomycetota
Streptomyces sp. WM6349 [LGCZ]
486591
486518
-
Glu
TTC
[ENA]
¡û
>W1511695815
LGDA01000001
Actinomycetota
Streptomyces sp. WM6368 [LGDA]
569104
569031
-
Glu
TTC
[ENA]
¡û
>W1511695925
LGDB01000233
Actinomycetota
Streptomyces sp. WM6372 [LGDB]
36650
36723
+
Glu
TTC
[ENA]
¡û
>W1511695942
LGDC01000001
Actinomycetota
Streptomyces sp. WM6373 [LGDC]
22735
22808
+
Glu
TTC
[ENA]
¡û
>W1511696117
LGDE01000260
Actinomycetota
Streptomyces sp. WM4235 [LGDE]
49352
49279
-
Glu
TTC
[ENA]
¡û
>W1511696284
LGDH01000001
Actinomycetota
Streptomyces sp. IGB124 [LGDH]
306545
306472
-
Glu
TTC
[ENA]
¡û
>W1511696381
LGDI01000180
Actinomycetota
Streptomyces sp. XY66 [LGDI]
251455
251382
-
Glu
TTC
[ENA]
¡û
>W1511696425
LGDJ01000001
Actinomycetota
Streptomyces sp. XY593 [LGDJ]
672107
672034
-
Glu
TTC
[ENA]
¡û
>W1511696490
LGDK01000001
Actinomycetota
Streptomyces sp. XY58 [LGDK]
252386
252313
-
Glu
TTC
[ENA]
¡û
>W1511696555
LGDL01000001
Actinomycetota
Streptomyces sp. XY533 [LGDL]
26638
26711
+
Glu
TTC
[ENA]
¡û
>W1511696667
LGDM01000271
Actinomycetota
Streptomyces sp. XY511 [LGDM]
159639
159566
-
Glu
TTC
[ENA]
¡û
>W1511696708
LGDN01000106
Actinomycetota
Streptomyces sp. XY37 [LGDN]
312583
312510
-
Glu
TTC
[ENA]
¡û
>W1511696879
LGDP01000217
Actinomycetota
Streptomyces sp. XY413 [LGDP]
33208
33135
-
Glu
TTC
[ENA]
¡û
>W1511696965
LGDR01000001
Actinomycetota
Streptomyces sp. H021 [LGDR]
251410
251337
-
Glu
TTC
[ENA]
¡û
>W1511697036
LGDS01000001
Actinomycetota
Streptomyces sp. H036 [LGDS]
486609
486536
-
Glu
TTC
[ENA]
¡û
>W1511697146
LGDT01000171
Actinomycetota
Streptomyces sp. MMG1064 [LGDT]
252560
252487
-
Glu
TTC
[ENA]
¡û
>W1511698177
LGHN01000171
Actinomycetota
Streptomyces sp. XY332 [LGHN]
35515
35588
+
Glu
TTC
[ENA]
¡û
>W1511706773
LGUP01000401
Actinomycetota
Streptomyces viridochromogenes NRRL 3427 [LGUP]
28574
28501
-
Glu
TTC
[ENA]
¡û
>W1511707131
LGUV01000373
Actinomycetota
Streptomyces virginiae NRRL B-1447 [LGUV]
31614
31541
-
Glu
TTC
[ENA]
¡û
>W11178188
AGDC01002847
Actinomycetota
Streptomyces lysosuperificus ATCC 31396 [AGDC]
117
44
-
Glu
TTC
[ENA]
¡û
>C161051679
CP013129
Actinomycetota
Streptomyces venezuelae ATCC 15439 [CP013129]
4715743
4715670
-
Glu
TTC
-
¡û
>C161107191
LN881739
Actinomycetota
Streptomyces venezuelae ATCC 15439 [LN881739]
4347724
4347797
+
Glu
TTC
-
¡û
>W1610050254
BBFQ01002500
Actinomycetota
Streptomyces drozdowiczii JCM 13580 [BBFQ]
80
153
+
Glu
TTC
[ENA]
¡û
>W1610642597
LJCW01000330
Actinomycetota
Actinobacteria bacterium OV450 [LJCW]
30398
30325
-
Glu
TTC
[ENA]
¡û
>W1610648031
LJFU01000022
Actinomycetota
Mycobacteroides immunogenum [LJFU]
40697
40770
+
Glu
TTC
[ENA]
¡û
>W1610648837
LJHN01000014
Actinomycetota
Mycobacterium intracellulare chimaera [LJHN]
94933
95006
+
Glu
TTC
[ENA]
¡û
>W1610724748
LMEI01000013
Actinomycetota
Streptomyces sp. Root431 [LMEI]
754619
754546
-
Glu
TTC
[ENA]
¡û
>W1610725118
LMEP01000024
Actinomycetota
Streptomyces sp. Root1304 [LMEP]
45976
46049
+
Glu
TTC
[ENA]
¡û
>W1610728528
LMHG01000031
Actinomycetota
Streptomyces sp. Root66D1 [LMHG]
46262
46335
+
Glu
TTC
[ENA]
¡û
>W1610867914
LQYB01000024
Actinomycetota
Streptomyces sp. IMTB 1903 [LQYB]
33570
33643
+
Glu
TTC
[ENA]
¡û
>W1710046653
BBFQ01002500
Actinomycetota
Streptomyces drozdowiczii JCM 13580 [BBFQ]
80
153
+
Glu
TTC
[ENA]
¡û
>W1710769552
LISX01000017
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
15397
15470
+
Glu
TTC
[ENA]
¡û
>W1710772904
LIVP01000005
Actinomycetota
Streptomyces sp. MJM1172 [LIVP]
321588
321515
-
Glu
TTC
[ENA]
¡û
>W1710772980
LIVQ01000004
Actinomycetota
Streptomyces sp. CB00455 [LIVQ]
32553
32626
+
Glu
TTC
[ENA]
¡û
>W1710773357
LIVX01000003
Actinomycetota
Streptomyces sp. CB02261 [LIVX]
668421
668348
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK