This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235666 (21 seq.)
>W1711503236
MKTK01000020
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
45514
45440
-
Arg
TCG
[ENA]
¡û
>C171047816
CP016359
Bacteroidota
Christiangramia flava JLT2011 [CP016359]
2418196
2418272
+
Arg
TCG
-
¡û
>WENV180732640
ODGY01001988
[ODGY] human metagenome; G_DNA_Supragingival plaque
5411
5485
+
Arg
TCG
[ENA]
¢þ
>WENV180888113
ODMN01000068
[ODMN] human metagenome; G_DNA_Supragingival plaque
34345
34271
-
Arg
TCG
[ENA]
¢þ
>WENV181019650
ODWU01008756
[ODWU] human metagenome; G_DNA_Supragingival plaque
2865
2939
+
Arg
TCG
[ENA]
¢þ
>WENV183707354
PDWI01007993
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7258
7332
+
Arg
TCG
[ENA]
¢þ
>WENV183708356
PDWI01015122
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2735
2661
-
Arg
TCG
[ENA]
¢þ
>WENV183709720
PDWI01032417
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3542
3616
+
Arg
TCG
[ENA]
¢þ
>WENV183711956
PDWI01084577
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
931
1005
+
Arg
TCG
[ENA]
¢þ
>WENV183721222
PDWJ01059654
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1486
1412
-
Arg
TCG
[ENA]
¢þ
>WENV170358363
CETK01083591
[CETK] marine metagenome genome assembly TARA_111_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
222
147
-
Arg
TCG
[ENA]
¢þ
>WENV170903199
MDTD01198014
[MDTD] marine metagenome; seawater
2057
2132
+
Arg
TCG
[ENA]
¢þ
>C181224945
LT906449
Bacteroidota
Capnocytophaga haemolytica NCTC12947 [LT906449]
1159816
1159890
+
Arg
TCG
-
¡û
>C191134761
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
612605
612679
+
Arg
TCG
-
¡û
>C151013050
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
1986990
1987064
+
Arg
TCG
[Ensembl]
¡û
>W1511685307
LFNG01000012
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
94894
94820
-
Arg
TCG
[ENA]
¡û
>C121010277
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
2035303
2035377
+
Arg
TCG
[Ensembl]
¡û
>C161068908
CP014227
Bacteroidota
Capnocytophaga haemolytica CCUG 32990 [CP014227]
704515
704439
-
Arg
TCG
[Ensembl]
¡û
>W1610029751
AXDE01000007
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
366110
366184
+
Arg
TCG
[ENA]
¡û
>W1710027121
AXDE01000007
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
366110
366184
+
Arg
TCG
[ENA]
¡û
>W1710571429
FOVX01000006
Bacteroidota
Capnocytophaga haemolytica [FOVX]
116224
116148
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK