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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235676 (42 seq.)
>W1711377904
MDZH01000178
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
12134
12061
-
His
GTG
[ENA]
¡û
>W131063366
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
863250
863177
-
His
GTG
[ENA]
¡û
>W131087172
AOCI01000082
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
24961
25034
+
His
GTG
[ENA]
¡û
>W131203774
ASZQ01000243
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
37635
37708
+
His
GTG
[ENA]
¡û
>W1711509601
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
1312493
1312418
-
His
GTG
[ENA]
¡û
>W1711603037
MOLN01000107
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
1042
1115
+
His
GTG
[ENA]
¡û
>W1711666680
MRCE01000007
Cyanobacteriota
Phormidium ambiguum IAM M-71 [MRCE]
97746
97819
+
His
GTG
[ENA]
¡û
>W1711772047
MVGR01000006
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
177185
177112
-
His
GTG
[ENA]
¡û
>C171016624
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
280591
280664
+
His
GTG
-
¡û
>C171064226
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
1344511
1344436
-
His
GTG
-
¡û
>C171112054
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
895950
896023
+
His
GTG
-
¡û
>W141065556
AQPY01000174
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
7858
7931
+
His
GTG
[ENA]
¡û
>W141073739
ASSJ01000079
Cyanobacteriota
Rubidibacter lacunae KORDI 51-2 [ASSJ]
64743
64670
-
His
GTG
[ENA]
¡û
>W141242388
CAIH01000381
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
22201
22128
-
His
GTG
[ENA]
¡û
>W141242476
CAIK01000045
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
12681
12608
-
His
GTG
[ENA]
¡û
>W141242601
CAIN01000159
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
1122
1195
+
His
GTG
[ENA]
¡û
>W141242657
CAIO01000440
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
512
585
+
His
GTG
[ENA]
¡û
>W141242679
CAIP01000139
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
23827
23900
+
His
GTG
[ENA]
¡û
>C08006344
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
1507256
1507329
+
His
GTG
[Ensembl]
¡û
>WENV170680837
LFEF01026503
[LFEF] freshwater metagenome; waterbloom
12502
12429
-
His
GTG
[ENA]
¢þ
>C181046176
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
4952222
4952295
+
His
GTG
-
¡û
>C191007261
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
5331994
5332067
+
His
GTG
-
¡û
>W1910018061
BDQK01000013
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
193268
193341
+
His
GTG
[ENA]
¡û
>W1910018110
BDQL01000030
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
2255
2328
+
His
GTG
[ENA]
¡û
>W1910020390
BDSM01000019
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
138691
138618
-
His
GTG
[ENA]
¡û
>W1910038668
BEIU01000012
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
80893
80820
-
His
GTG
[ENA]
¡û
>W1910038690
BEIV01000018
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
25924
25851
-
His
GTG
[ENA]
¡û
>W1910067365
BEYQ01000008
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
261268
261195
-
His
GTG
[ENA]
¡û
>W1910142318
BIFY01000003
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
88973
88900
-
His
GTG
[ENA]
¡û
>W1910665580
MCIH01000183
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
25462
25535
+
His
GTG
[ENA]
¡û
>W1810267669
PQWO01000019
Cyanobacteriota
Acaryochloris thomasi RCC1774 [PQWO]
33374
33447
+
His
GTG
[ENA]
¡û
>C151079355
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
283186
283259
+
His
GTG
[Ensembl]
¡û
>W1510013648
BBPA01000075
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
80607
80534
-
His
GTG
[ENA]
¡û
>W11143167
AEPQ01000195
Cyanobacteriota
Moorena producens 3L [AEPQ]
17268
17343
+
His
GTG
[ENA]
¡û
>C161097304
CP016474
Cyanobacteriota
Picosynechococcus sp. PCC 7003 [CP016474]
1217846
1217919
+
His
GTG
[Ensembl]
¡û
>W1610550825
JXYX01000005
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
75349
75276
-
His
GTG
[ENA]
¡û
>W1710004727
AJHB01000481
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
514
587
+
His
GTG
[ENA]
¡û
>W1710005075
AJUS01000522
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
514
587
+
His
GTG
[ENA]
¡û
>W1710005111
AJUT01000481
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
514
587
+
His
GTG
[ENA]
¡û
>W1710005148
AJUU01000478
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
514
587
+
His
GTG
[ENA]
¡û
>W1710609624
FXWN01000001
Cyanobacteriota
Synechococcus sp. 7002 [FXWN]
3047516
3047443
-
His
GTG
[ENA]
¡û
>W1710660702
JXYX01000005
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
75349
75276
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK