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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235696 (76 seq.)
>W1710810655
LKHP01000002
Bacillota
Caloramator mitchellensis [LKHP]
186624
186699
+
Trp
CCA
[ENA]
¡û
>W1711048214
LRPL01000166
Bacillota
Anaerococcus hydrogenalis [LRPL]
34
109
+
Trp
CCA
[ENA]
¡û
>W1711071250
LSGP01000013
Bacillota
Anaerosporomusa subterranea [LSGP]
494582
494507
-
Trp
CCA
[ENA]
¡û
>W1711071251
LSGP01000013
Bacillota
Anaerosporomusa subterranea [LSGP]
493371
493296
-
Trp
CCA
[ENA]
¡û
>W1711076499
LSLJ01000001
Bacillota
Sporomusa sphaeroides DSM 2875 [LSLJ]
2317312
2317237
-
Trp
CCA
[ENA]
¡û
>W1712038476
NFIY01000035
Bacillota
Megasphaera sp. An286 [NFIY]
114
189
+
Trp
CCA
[ENA]
¡û
>C171130871
LT700188
Bacillota
Negativicoccus massiliensis Marseille-P2082 [LT700188]
506690
506615
-
Trp
CCA
-
¡û
>W131052758
AMZI01000042
Bacillota
Pelosinus sp. HCF1 [AMZI]
20881
20806
-
Trp
CCA
[ENA]
¡û
>W131171177
ARGA01000058
Bacillota
Anaeromusa acidaminophila DSM 3853 [ARGA]
48463
48388
-
Trp
CCA
[ENA]
¡û
>W131231462
AUIL01000069
Bacillota
Sporomusa ovata DSM 2662 [AUIL]
537
612
+
Trp
CCA
[ENA]
¡û
>W131231493
AUIL01000114
Bacillota
Sporomusa ovata DSM 2662 [AUIL]
815
890
+
Trp
CCA
[ENA]
¡û
>W131236391
AUMI01000015
Bacillota
Anaeroarcus burkinensis DSM 6283 [AUMI]
168194
168119
-
Trp
CCA
[ENA]
¡û
>WENV180598380
OCPM01000502
[OCPM] human gut metagenome; faeces
97
172
+
Trp
CCA
[ENA]
¢þ
>W141074041
ASXP01000002
Bacillota
Sporomusa ovata DSM 2662 [ASXP]
976597
976672
+
Trp
CCA
[ENA]
¡û
>W141074077
ASXP01000005
Bacillota
Sporomusa ovata DSM 2662 [ASXP]
439499
439424
-
Trp
CCA
[ENA]
¡û
>WENV181329068
OFLV01011005
[OFLV] metagenome; faeces
124
199
+
Trp
CCA
[ENA]
¢þ
>WENV181801873
OGSC01000225
[OGSC] human gut metagenome; fecal sample 8 from infant 5
39363
39288
-
Trp
CCA
[ENA]
¢þ
>WENV181804588
OGSF01004756
[OGSF] human gut metagenome; fecal sample 3 from infant 5
1076
1001
-
Trp
CCA
[ENA]
¢þ
>WENV181806317
OGSK01001188
[OGSK] human gut metagenome; fecal sample 2 from infant 5
57
132
+
Trp
CCA
[ENA]
¢þ
>WENV181806721
OGSL01002337
[OGSL] human gut metagenome; fecal sample 6 from infant 5
1317
1242
-
Trp
CCA
[ENA]
¢þ
>WENV181814193
OGTF01000402
[OGTF] human gut metagenome; fecal sample 5 from infant 5
6426
6351
-
Trp
CCA
[ENA]
¢þ
>WENV181821383
OGUE01001343
[OGUE] human gut metagenome; fecal sample 1 from infant 5
1941
1866
-
Trp
CCA
[ENA]
¢þ
>WENV182435172
OIJB01019043
[OIJB] human gut metagenome; human gut
496
571
+
Trp
CCA
[ENA]
¢þ
>WENV182462496
OINY01004144
[OINY] human gut metagenome; human gut
1514
1439
-
Trp
CCA
[ENA]
¢þ
>W141244561
CAKP01000029
Bacillota
Caloramator australicus RC3 [CAKP]
4049
4124
+
Trp
CCA
[ENA]
¡û
>WENV182799279
OJTS01000758
[OJTS] human gut metagenome; human gut
1151
1226
+
Trp
CCA
[ENA]
¢þ
>WENV182814003
OJYG01003268
[OJYG] human gut metagenome; human gut
362
437
+
Trp
CCA
[ENA]
¢þ
>WENV182828828
OKDJ01001737
[OKDJ] human gut metagenome; human gut
57
132
+
Trp
CCA
[ENA]
¢þ
>WENV182829435
OKDP01001395
[OKDP] human gut metagenome; human gut
800
725
-
Trp
CCA
[ENA]
¢þ
>WENV182837120
OKGC01002542
[OKGC] human gut metagenome; human gut
199
274
+
Trp
CCA
[ENA]
¢þ
>WENV182845401
OKJC01000791
[OKJC] human gut metagenome; human gut
608
683
+
Trp
CCA
[ENA]
¢þ
>WENV182961384
OKWK01003439
[OKWK] human gut metagenome; stool
1103
1028
-
Trp
CCA
[ENA]
¢þ
>WENV183745609
POVV01000156
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
8989
8914
-
Trp
CCA
[ENA]
¢þ
>WENV183745928
POVV01002050
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
1303
1378
+
Trp
CCA
[ENA]
¢þ
>WENV183792896
PPYF01465136
[PPYF] human gut metagenome; stool from patient with Crohn's disease
81
156
+
Trp
CCA
[ENA]
¢þ
>WENV170001448
AGFS01047274
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
269
344
+
Trp
CCA
[ENA]
¢þ
>WENV170784141
MCHG01000035
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
112257
112182
-
Trp
CCA
[ENA]
¢þ
>C181178711
CP029462
Bacillota
Megasphaera stantonii AJH120 [CP029462]
673874
673799
-
Trp
CCA
-
¡û
>W1910004781
AWQQ01000069
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
50668
50593
-
Trp
CCA
[ENA]
¡û
>W1910004959
AWVY01000032
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
68287
68212
-
Trp
CCA
[ENA]
¡û
>W1910200226
FCOW01000012
Bacillota
Sporomusa sphaeroides DSM 2875 [FCOW]
107153
107228
+
Trp
CCA
[ENA]
¡û
>W1910639021
LSLK01000110
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
7690
7615
-
Trp
CCA
[ENA]
¡û
>W1910639044
LSLK01000143
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
62622
62547
-
Trp
CCA
[ENA]
¡û
>W1910639163
LSLL01000146
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
35758
35833
+
Trp
CCA
[ENA]
¡û
>W1911192106
NQXW01000022
Bacillota
Megasphaera sp. ASD88 [NQXW]
132
207
+
Trp
CCA
[ENA]
¡û
>W1810272746
PSNP01000030
Bacillota
Megasphaera stantonii AJH120 [PSNP]
244
319
+
Trp
CCA
[ENA]
¡û
>C151038532
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1801067
1801142
+
Trp
CCA
[Ensembl]
¡û
>C151038533
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1808656
1808731
+
Trp
CCA
[Ensembl]
¡û
>C151074885
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
3072756
3072681
-
Trp
CCA
[Ensembl]
¡û
>WENV11101520
AGFS01047274
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
269
344
+
Trp
CCA
[ENA]
¡û
>W1510586069
CTRP01000005
Bacillota
Sporomusa ovata An4 [CTRP]
31555
31630
+
Trp
CCA
[ENA]
¡û
>W1510586141
CTRP01000014
Bacillota
Sporomusa ovata An4 [CTRP]
272394
272319
-
Trp
CCA
[ENA]
¡û
>C11107359
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
2236075
2236000
-
Trp
CCA
[Ensembl]
¡û
>W1510755303
CYSP01000014
Bacillota
Propionispora sp. 2/2-37 Iso2/2 [CYSP]
111488
111563
+
Trp
CCA
[ENA]
¡û
>W1511351198
JRMZ01000062
Bacillota
Tissierellia bacterium S5-A11 S5-A11 [JRMZ]
37935
37860
-
Trp
CCA
[ENA]
¡û
>W11161288
AFGF01000013
Bacillota
Acetonema longum DSM 6540 [AFGF]
11210
11135
-
Trp
CCA
[ENA]
¡û
>W11161315
AFGF01000071
Bacillota
Acetonema longum DSM 6540 [AFGF]
15567
15492
-
Trp
CCA
[ENA]
¡û
>W121008452
AGCJ01000041
Bacillota
Anaeroglobus geminatus F0357 [AGCJ]
75
150
+
Trp
CCA
[ENA]
¡û
>W121101522
AKVJ01000029
Bacillota
Pelosinus fermentans B4 [AKVJ]
267449
267374
-
Trp
CCA
[ENA]
¡û
>W121101573
AKVK01000439
Bacillota
Pelosinus fermentans B3 [AKVK]
49
124
+
Trp
CCA
[ENA]
¡û
>W121101595
AKVL01000578
Bacillota
Pelosinus fermentans A12 [AKVL]
49
124
+
Trp
CCA
[ENA]
¡û
>W121101642
AKVM01000070
Bacillota
Pelosinus fermentans A11 [AKVM]
267450
267375
-
Trp
CCA
[ENA]
¡û
>W121101710
AKVN01000028
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
176656
176581
-
Trp
CCA
[ENA]
¡û
>W121101772
AKVO01000035
Bacillota
Pelosinus fermentans JBW45 [AKVO]
144032
143957
-
Trp
CCA
[ENA]
¡û
>W1610674710
LKHP01000002
Bacillota
Caloramator mitchellensis [LKHP]
186624
186699
+
Trp
CCA
[ENA]
¡û
>W1610889343
LRPL01000166
Bacillota
Anaerococcus hydrogenalis [LRPL]
34
109
+
Trp
CCA
[ENA]
¡û
>W1610910510
LSGP01000013
Bacillota
Anaerosporomusa subterranea [LSGP]
494582
494507
-
Trp
CCA
[ENA]
¡û
>W1610910511
LSGP01000013
Bacillota
Anaerosporomusa subterranea [LSGP]
493371
493296
-
Trp
CCA
[ENA]
¡û
>W1710513909
FNAM01000076
Bacillota
Sporomusa acidovorans [FNAM]
15474
15399
-
Trp
CCA
[ENA]
¡û
>W1710526317
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
3007416
3007341
-
Trp
CCA
[ENA]
¡û
>W1710548636
FODY01000019
Bacillota
Propionispora vibrioides [FODY]
47445
47520
+
Trp
CCA
[ENA]
¡û
>W1710568584
FOTS01000025
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
61553
61478
-
Trp
CCA
[ENA]
¡û
>W1710588180
FQZD01000035
Bacillota
Propionispora hippei DSM 15287 [FQZD]
12272
12197
-
Trp
CCA
[ENA]
¡û
>W1710588918
FQZS01000011
Bacillota
Lutispora thermophila DSM 19022 [FQZS]
115124
115199
+
Trp
CCA
[ENA]
¡û
>W1710605806
FWXI01000008
Bacillota
Sporomusa malonica [FWXI]
9514
9439
-
Trp
CCA
[ENA]
¡û
>W1710605865
FWXI01000044
Bacillota
Sporomusa malonica [FWXI]
6992
6917
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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