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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23573 (95 seq.)
>W1710860467
LMCW01000067
Alphaproteobacteria
Rhizobium sp. Root1203 [LMCW]
32121
32210
+
Ser
GCT
[ENA]
¡û
>W1710860569
LMCZ01000012
Alphaproteobacteria
Rhizobium sp. Root1204 [LMCZ]
135465
135376
-
Ser
GCT
[ENA]
¡û
>W1710866894
LMHV01000043
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
630613
630702
+
Ser
GCT
[ENA]
¡û
>W1711081132
LSRP01000078
Alphaproteobacteria
Pararhizobium antarcticum 59 [LSRP]
27028
26939
-
Ser
GCT
[ENA]
¡û
>W1711213597
LXKM01000001
Alphaproteobacteria
Agrobacterium sp. 13-626 [LXKM]
1402661
1402572
-
Ser
GCT
[ENA]
¡û
>W1711213638
LXKN01000001
Alphaproteobacteria
Rhizobium sp. AC27/96 [LXKN]
368312
368401
+
Ser
GCT
[ENA]
¡û
>W1711213732
LXKP01000001
Alphaproteobacteria
Agrobacterium sp. B131/95 [LXKP]
191475
191564
+
Ser
GCT
[ENA]
¡û
>W1711213786
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
1047526
1047437
-
Ser
GCT
[ENA]
¡û
>W1711283521
LZPI01000069
Alphaproteobacteria
Rhizobium sp. YK2 [LZPI]
126236
126325
+
Ser
GCT
[ENA]
¡û
>W1711326033
MBEY01000031
Alphaproteobacteria
Agrobacterium vitis [MBEY]
146378
146289
-
Ser
GCT
[ENA]
¡û
>W1711326129
MBFA01000079
Alphaproteobacteria
Agrobacterium vitis [MBFA]
95155
95244
+
Ser
GCT
[ENA]
¡û
>W1711326267
MBFD01000085
Alphaproteobacteria
Agrobacterium vitis [MBFD]
442997
442908
-
Ser
GCT
[ENA]
¡û
>W131237813
AUSB01000121
Alphaproteobacteria
Rhizobium sp. JGI 001013-F22 [AUSB]
1477
1388
-
Ser
GCT
[ENA]
¡û
>W1711506061
MKWB01000034
Alphaproteobacteria
Rhizobium sp. 60-20 [MKWB]
496641
496730
+
Ser
GCT
[ENA]
¡û
>W1711636786
MPVZ01000007
Alphaproteobacteria
Rhizobium sp. P44RR-XXIV [MPVZ]
36167
36256
+
Ser
GCT
[ENA]
¡û
>W141004108
AEYE02000008
Alphaproteobacteria
Rhizobium grahamii CCGE 502 [AEYE]
145054
145143
+
Ser
GCT
[ENA]
¡û
>W141065152
AQHN01000072
Alphaproteobacteria
Rhizobium freirei PRF 81 [AQHN]
230746
230835
+
Ser
GCT
[ENA]
¡û
>W141236074
BAYX01000002
Alphaproteobacteria
Rhizobium rhizogenes NBRC 13257 [BAYX]
191252
191341
+
Ser
GCT
[ENA]
¡û
>W141485668
JFZP01000013
Alphaproteobacteria
Rhizobium rhizogenes [JFZP]
1934393
1934304
-
Ser
GCT
[ENA]
¡û
>C181074735
CP022998
Alphaproteobacteria
Rhizobium sp. 11515TR [CP022998]
1816392
1816481
+
Ser
GCT
-
¡û
>C191093643
CP032684
Alphaproteobacteria
Rhizobium sp. CCGE531 [CP032684]
1265988
1266077
+
Ser
GCT
-
¡û
>C191093694
CP032689
Alphaproteobacteria
Rhizobium sp. CCGE532 [CP032689]
1264961
1265050
+
Ser
GCT
-
¡û
>W141712219
JMQK01000006
Alphaproteobacteria
Pseudorhizobium marinum MGL06 [JMQK]
7141
7230
+
Ser
GCT
[ENA]
¡û
>W141739437
JNNU01000005
Alphaproteobacteria
Neorhizobium vignae [JNNU]
319323
319234
-
Ser
GCT
[ENA]
¡û
>W141816227
JQJS01000013
Alphaproteobacteria
Rhizobium leguminosarum [JQJS]
1076
987
-
Ser
GCT
[ENA]
¡û
>W141816460
JQJW01000003
Alphaproteobacteria
Rhizobium rhizogenes [JQJW]
373940
373851
-
Ser
GCT
[ENA]
¡û
>W141816499
JQJX01000002
Alphaproteobacteria
Rhizobium rhizogenes [JQJX]
153112
153023
-
Ser
GCT
[ENA]
¡û
>W141817761
JQLA01000005
Alphaproteobacteria
Rhizobium sp. OK494 [JQLA]
232668
232757
+
Ser
GCT
[ENA]
¡û
>W141817812
JQLB01000004
Alphaproteobacteria
Rhizobium sp. YR060 [JQLB]
525267
525178
-
Ser
GCT
[ENA]
¡û
>W141819112
JQMB01000001
Alphaproteobacteria
Rhizobium alamii [JQMB]
444321
444410
+
Ser
GCT
[ENA]
¡û
>W1910840678
NAAC01000006
Alphaproteobacteria
Rhizobium grahamii CCGM3 [NAAC]
212047
212136
+
Ser
GCT
[ENA]
¡û
>C09100675
CP000628
Alphaproteobacteria
Rhizobium rhizogenes K84 [CP000628, CP000629]
1251976
1252065
+
Ser
GCT
[Ensembl]
¡û
>W1911655887
QERI01000004
Alphaproteobacteria
Rhizobium sp. SEMIA 4088 [QERI]
296481
296392
-
Ser
GCT
[ENA]
¡û
>W1810346002
PVBF01000008
Alphaproteobacteria
Neorhizobium tomejilense T20_22 [PVBF]
185364
185453
+
Ser
GCT
[ENA]
¡û
>W1810346050
PVBG01000023
Alphaproteobacteria
Neorhizobium tomejilense T17_20 [PVBG]
29310
29221
-
Ser
GCT
[ENA]
¡û
>W1810346099
PVBH01000021
Alphaproteobacteria
Neorhizobium tomejilense T11_12 [PVBH]
85791
85880
+
Ser
GCT
[ENA]
¡û
>W1810346109
PVBI01000002
Alphaproteobacteria
Neorhizobium sp. T25_13 [PVBI]
16435
16524
+
Ser
GCT
[ENA]
¡û
>W1810346189
PVBJ01000009
Alphaproteobacteria
Neorhizobium sp. T25_27 [PVBJ]
83089
83178
+
Ser
GCT
[ENA]
¡û
>W1810346231
PVBK01000007
Alphaproteobacteria
Neorhizobium sp. T7_12 [PVBK]
58403
58492
+
Ser
GCT
[ENA]
¡û
>W1810346293
PVBL01000027
Alphaproteobacteria
Neorhizobium sp. T6_25 [PVBL]
36873
36784
-
Ser
GCT
[ENA]
¡û
>W1810696358
QLTG01000011
Alphaproteobacteria
Rhizobium sp. NFR17 [QLTG]
192700
192611
-
Ser
GCT
[ENA]
¡û
>W1810706796
QMKK01000038
Alphaproteobacteria
Rhizobium tropici IGFRI Rhizo-19 [QMKK]
45268
45357
+
Ser
GCT
[ENA]
¡û
>SRA1014835
SRR023845.337195
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
17
-
Ser
GCT
[SRA]
>SRA1014940
SRR023845.391127
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
17
-
Ser
GCT
[SRA]
>C151101635
HG938353
Alphaproteobacteria
Neorhizobium galegae bv. orientalis str. HAMBI 540 [HG938353]
918439
918528
+
Ser
GCT
[Ensembl]
¡û
>C151101682
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
889393
889482
+
Ser
GCT
[Ensembl]
¡û
>W1510052891
CCRG01000019
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRG]
29156
29067
-
Ser
GCT
[ENA]
¡û
>W1510052934
CCRH01000014
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRH]
57532
57443
-
Ser
GCT
[ENA]
¡û
>W1510052960
CCRI01000006
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRI]
106636
106725
+
Ser
GCT
[ENA]
¡û
>W1510053003
CCRJ01000005
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
330033
329944
-
Ser
GCT
[ENA]
¡û
>W1510053069
CCRK01000014
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRK]
56244
56155
-
Ser
GCT
[ENA]
¡û
>W1510053113
CCRL01000019
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRL]
55679
55590
-
Ser
GCT
[ENA]
¡û
>W1510053159
CCRM01000073
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRM]
7945
8034
+
Ser
GCT
[ENA]
¡û
>W1510053181
CCRN01000006
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRN]
397807
397718
-
Ser
GCT
[ENA]
¡û
>W1511432707
JUGS01000008
Alphaproteobacteria
Rhizobium rhizogenes CF262 [JUGS]
898791
898880
+
Ser
GCT
[ENA]
¡û
>W1511433450
JUHF01000008
Alphaproteobacteria
Rhizobium rhizogenes CF263 [JUHF]
1970212
1970123
-
Ser
GCT
[ENA]
¡û
>W1511433511
JUHG01000018
Alphaproteobacteria
Rhizobium rhizogenes OV677 [JUHG]
35636
35725
+
Ser
GCT
[ENA]
¡û
>W1511433576
JUHI01000001
Alphaproteobacteria
Rhizobium tropici PTD1 [JUHI]
308862
308773
-
Ser
GCT
[ENA]
¡û
>W1511433651
JUHJ01000012
Alphaproteobacteria
Rhizobium sp. YR528 [JUHJ]
171278
171189
-
Ser
GCT
[ENA]
¡û
>W1511433938
JUHP01000001
Alphaproteobacteria
Rhizobium rhizogenes YR530 [JUHP]
1372746
1372835
+
Ser
GCT
[ENA]
¡û
>W1511434004
JUHQ01000020
Alphaproteobacteria
Rhizobium tropici YR635 [JUHQ]
94709
94620
-
Ser
GCT
[ENA]
¡û
>W1511434059
JUHR01000016
Alphaproteobacteria
Rhizobium alamii YR584 [JUHR]
92970
92881
-
Ser
GCT
[ENA]
¡û
>W1511434158
JUHT01000043
Alphaproteobacteria
Rhizobium lusitanum YR374 [JUHT]
14957
15046
+
Ser
GCT
[ENA]
¡û
>C161003853
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
1983279
1983368
+
Ser
GCT
[Ensembl]
¡û
>W1610056492
BBWI01000003
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
178497
178408
-
Ser
GCT
[ENA]
¡û
>W1610056649
BBWL01000012
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
3598
3687
+
Ser
GCT
[ENA]
¡û
>W1610056735
BBWM01000059
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
13712
13801
+
Ser
GCT
[ENA]
¡û
>W121068999
AJVM01000023
Alphaproteobacteria
Rhizobium sp. AP16 [AJVM]
68634
68545
-
Ser
GCT
[ENA]
¡û
>W121070079
AJWE01000100
Alphaproteobacteria
Rhizobium sp. CF142 [AJWE]
1383
1294
-
Ser
GCT
[ENA]
¡û
>W121086620
AKKC01000215
Alphaproteobacteria
Rhizobium sp. CF080 [AKKC]
4192
4103
-
Ser
GCT
[ENA]
¡û
>C131011488
CP004015
Alphaproteobacteria
Rhizobium tropici CIAT 899 [CP004015]
1175011
1175100
+
Ser
GCT
[Ensembl]
¡û
>W1610514316
FMAC01000002
Alphaproteobacteria
Rhizobium hainanense [FMAC]
200243
200332
+
Ser
GCT
[ENA]
¡û
>W1610514454
FMAF01000001
Alphaproteobacteria
Rhizobium lusitanum [FMAF]
222421
222332
-
Ser
GCT
[ENA]
¡û
>W1610514503
FMAG01000002
Alphaproteobacteria
Rhizobium multihospitium [FMAG]
664005
664094
+
Ser
GCT
[ENA]
¡û
>W1610514574
FMAH01000021
Alphaproteobacteria
Rhizobium miluonense [FMAH]
10055
10144
+
Ser
GCT
[ENA]
¡û
>W1610588106
LDPZ01000006
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
247871
247960
+
Ser
GCT
[ENA]
¡û
>W1610588162
LDQA01000014
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
52492
52581
+
Ser
GCT
[ENA]
¡û
>W1610616421
LGLV01000005
Alphaproteobacteria
Pararhizobium polonicum [LGLV]
179230
179319
+
Ser
GCT
[ENA]
¡û
>W1610722813
LMCW01000067
Alphaproteobacteria
Rhizobium sp. Root1203 [LMCW]
32121
32210
+
Ser
GCT
[ENA]
¡û
>W1610722915
LMCZ01000012
Alphaproteobacteria
Rhizobium sp. Root1204 [LMCZ]
135465
135376
-
Ser
GCT
[ENA]
¡û
>W1610729240
LMHV01000043
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
630613
630702
+
Ser
GCT
[ENA]
¡û
>W1611000601
LXKM01000001
Alphaproteobacteria
Agrobacterium sp. 13-626 [LXKM]
1402661
1402572
-
Ser
GCT
[ENA]
¡û
>W1611000642
LXKN01000001
Alphaproteobacteria
Rhizobium sp. AC27/96 [LXKN]
368312
368401
+
Ser
GCT
[ENA]
¡û
>W1611000736
LXKP01000001
Alphaproteobacteria
Agrobacterium sp. B131/95 [LXKP]
191475
191564
+
Ser
GCT
[ENA]
¡û
>W1611000790
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
1047526
1047437
-
Ser
GCT
[ENA]
¡û
>W1710053191
BBWI01000003
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
178497
178408
-
Ser
GCT
[ENA]
¡û
>W1710053348
BBWL01000012
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
3598
3687
+
Ser
GCT
[ENA]
¡û
>W1710053434
BBWM01000059
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
13712
13801
+
Ser
GCT
[ENA]
¡û
>W1710500006
FMAC01000002
Alphaproteobacteria
Rhizobium hainanense [FMAC]
200243
200332
+
Ser
GCT
[ENA]
¡û
>W1710500144
FMAF01000001
Alphaproteobacteria
Rhizobium lusitanum [FMAF]
222421
222332
-
Ser
GCT
[ENA]
¡û
>W1710500193
FMAG01000002
Alphaproteobacteria
Rhizobium multihospitium [FMAG]
664005
664094
+
Ser
GCT
[ENA]
¡û
>W1710500264
FMAH01000021
Alphaproteobacteria
Rhizobium miluonense [FMAH]
10055
10144
+
Ser
GCT
[ENA]
¡û
>W1710707386
LDPZ01000006
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
247871
247960
+
Ser
GCT
[ENA]
¡û
>W1710707442
LDQA01000014
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
52492
52581
+
Ser
GCT
[ENA]
¡û
>W1710737667
LGLV01000005
Alphaproteobacteria
Pararhizobium polonicum [LGLV]
179230
179319
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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