This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235742 (58 seq.)
>W1711606560
MORL01000001
Bacteroidota
Arsenicibacter rosenii [MORL]
934020
934095
+
Lys
TTT
[ENA]
¡û
>W1711606586
MORL01000011
Bacteroidota
Arsenicibacter rosenii [MORL]
128848
128923
+
Lys
TTT
[ENA]
¡û
>W1711769457
MVEC01000005
Bacteroidota
Spirosoma sp. 209 [MVEC]
110722
110797
+
Lys
TTT
[ENA]
¡û
>W1711769468
MVEC01000018
Bacteroidota
Spirosoma sp. 209 [MVEC]
21336
21261
-
Lys
TTT
[ENA]
¡û
>C171030731
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
1940669
1940744
+
Lys
TTT
-
¡û
>C171030758
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
653141
653066
-
Lys
TTT
-
¡û
>C171037543
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
6094059
6094134
+
Lys
TTT
-
¡û
>C171037548
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
5966319
5966244
-
Lys
TTT
-
¡û
>C171104442
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
4232860
4232935
+
Lys
TTT
-
¡û
>C171104445
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
4277928
4277853
-
Lys
TTT
-
¡û
>W131169802
ARFA01000005
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
75098
75173
+
Lys
TTT
[ENA]
¡û
>W131169914
ARFC01000037
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
21607
21534
-
Lys
TTT
[ENA]
¡û
>W131169940
ARFD01000053
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
7587
7514
-
Lys
TTT
[ENA]
¡û
>W131181648
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
798743
798818
+
Lys
TTT
[ENA]
¡û
>WENV180104731
OAPC01085100
[OAPC] marine metagenome; na
382
309
-
Lys
TTT
[ENA]
¢þ
>W141242775
CAIT01000006
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
961762
961837
+
Lys
TTT
[ENA]
¡û
>W141242781
CAIT01000006
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
631074
630999
-
Lys
TTT
[ENA]
¡û
>WENV182548930
OJBX01002128
[OJBX] seawater metagenome; Sea water
2200
2127
-
Lys
TTT
[ENA]
¢þ
>WENV182551203
OJCB01061911
[OJCB] seawater metagenome; Sea water
298
225
-
Lys
TTT
[ENA]
¢þ
>WENV182574430
OJFR01019132
[OJFR] seawater metagenome; Sea water
341
268
-
Lys
TTT
[ENA]
¢þ
>WENV183062141
OLID01000140
[OLID] seawater metagenome; Sea water
15290
15217
-
Lys
TTT
[ENA]
¢þ
>WENV170982105
MWVU01014957
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
451
376
-
Lys
TTT
[ENA]
¢þ
>WENV170983542
MWVV01047962
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
432
505
+
Lys
TTT
[ENA]
¢þ
>WENV170984409
MWVV01272890
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
74
147
+
Lys
TTT
[ENA]
¢þ
>C181001911
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
1940697
1940770
+
Lys
TTT
-
¡û
>C181001912
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
1942789
1942862
+
Lys
TTT
-
¡û
>C181001913
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
1942920
1942993
+
Lys
TTT
-
¡û
>C181001952
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
1946788
1946715
-
Lys
TTT
-
¡û
>C181113112
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
775058
775131
+
Lys
TTT
-
¡û
>C181113146
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
1891917
1891844
-
Lys
TTT
-
¡û
>W09109903
ABUR01000001
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
450139
450064
-
Lys
TTT
[ENA]
¡û
>W09109933
ABUR01000026
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
35896
35971
+
Lys
TTT
[ENA]
¡û
>W1911497272
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
1974371
1974298
-
Lys
TTT
[ENA]
¡û
>W1911497273
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
1763549
1763476
-
Lys
TTT
[ENA]
¡û
>W1911726779
QTJY01000001
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
132725
132800
+
Lys
TTT
[ENA]
¡û
>W1911726780
QTJY01000001
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
132861
132936
+
Lys
TTT
[ENA]
¡û
>W1911766806
QXED01000003
Bacteroidota
Fibrisoma montanum HYT19 [QXED]
447889
447964
+
Lys
TTT
[ENA]
¡û
>W1911766810
QXED01000003
Bacteroidota
Fibrisoma montanum HYT19 [QXED]
94248
94173
-
Lys
TTT
[ENA]
¡û
>W1810364376
PVTE01000010
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
121195
121120
-
Lys
TTT
[ENA]
¡û
>W1810364390
PVTE01000028
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
29619
29692
+
Lys
TTT
[ENA]
¡û
>W1810692060
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
1491579
1491652
+
Lys
TTT
[ENA]
¡û
>W1810692062
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
1723721
1723794
+
Lys
TTT
[ENA]
¡û
>W1810694550
QLMC01000002
Bacteroidota
Larkinella arboricola DSM 21851 [QLMC]
875804
875731
-
Lys
TTT
[ENA]
¡û
>W1810694551
QLMC01000002
Bacteroidota
Larkinella arboricola DSM 21851 [QLMC]
875656
875583
-
Lys
TTT
[ENA]
¡û
>W1810745139
QOWE01000010
Bacteroidota
Larkinella punicea zzj9 [QOWE]
84183
84110
-
Lys
TTT
[ENA]
¡û
>W1810745140
QOWE01000010
Bacteroidota
Larkinella punicea zzj9 [QOWE]
84024
83949
-
Lys
TTT
[ENA]
¡û
>C151068610
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
3239063
3239138
+
Lys
TTT
[Ensembl]
¡û
>C151068635
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
2679634
2679561
-
Lys
TTT
[Ensembl]
¡û
>C10111761
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
2797410
2797485
+
Lys
TTT
[Ensembl]
¡û
>C10111799
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
2018919
2018844
-
Lys
TTT
[Ensembl]
¡û
>C161104968
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
3985142
3985217
+
Lys
TTT
[Ensembl]
¡û
>C161104973
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
4484184
4484259
+
Lys
TTT
[Ensembl]
¡û
>W1710558181
FOLQ01000001
Bacteroidota
Spirosoma endophyticum [FOLQ]
737939
738014
+
Lys
TTT
[ENA]
¡û
>W1710558198
FOLQ01000008
Bacteroidota
Spirosoma endophyticum [FOLQ]
111963
111890
-
Lys
TTT
[ENA]
¡û
>W1710599385
FTOR01000008
Bacteroidota
Filimonas lacunae [FTOR]
307532
307607
+
Lys
TTT
[ENA]
¡û
>W1710599386
FTOR01000008
Bacteroidota
Filimonas lacunae [FTOR]
313623
313548
-
Lys
TTT
[ENA]
¡û
>W1710599387
FTOR01000008
Bacteroidota
Filimonas lacunae [FTOR]
311531
311456
-
Lys
TTT
[ENA]
¡û
>W1710599388
FTOR01000008
Bacteroidota
Filimonas lacunae [FTOR]
311400
311325
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK