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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235793 (55 seq.)
>W1710999433
LQDK01000215
Gammaproteobacteria
Mannheimia haemolytica [LQDK]
556
481
-
Met
CAT
[ENA]
¡û
>W1711000078
LQEB01000060
Gammaproteobacteria
Mannheimia haemolytica [LQEB]
16695
16770
+
Met
CAT
[ENA]
¡û
>W1711000305
LQEG01000113
Gammaproteobacteria
Mannheimia haemolytica [LQEG]
99155
99230
+
Met
CAT
[ENA]
¡û
>W1711000452
LQEK01000060
Gammaproteobacteria
Mannheimia haemolytica [LQEK]
261
186
-
Met
CAT
[ENA]
¡û
>W1711000540
LQEM01000060
Gammaproteobacteria
Mannheimia haemolytica [LQEM]
261
186
-
Met
CAT
[ENA]
¡û
>W1711000666
LQEP01000093
Gammaproteobacteria
Mannheimia haemolytica [LQEP]
15350
15425
+
Met
CAT
[ENA]
¡û
>W1711000785
LQER01000120
Gammaproteobacteria
Mannheimia haemolytica [LQER]
99362
99437
+
Met
CAT
[ENA]
¡û
>W1711001256
LQFD01000077
Gammaproteobacteria
Mannheimia haemolytica [LQFD]
261
186
-
Met
CAT
[ENA]
¡û
>W1711001388
LQFG01000073
Gammaproteobacteria
Mannheimia haemolytica [LQFG]
1323
1248
-
Met
CAT
[ENA]
¡û
>W1711001805
LQFQ01000053
Gammaproteobacteria
Mannheimia haemolytica [LQFQ]
16695
16770
+
Met
CAT
[ENA]
¡û
>W1711002246
LQGA01000080
Gammaproteobacteria
Mannheimia haemolytica [LQGA]
16026
16101
+
Met
CAT
[ENA]
¡û
>W1711766018
MUYA01000004
Gammaproteobacteria
Haemophilus paracuniculus [MUYA]
329387
329462
+
Met
CAT
[ENA]
¡û
>WENV180011446
FLSK01003058
[FLSK] metagenome; saliva
10778
10853
+
Ile2
CAT
[ENA]
¢þ
>WENV180456992
OBXT01001208
[OBXT] human gut metagenome; faeces
4056
4131
+
Ile2
CAT
[ENA]
¢þ
>WENV180722312
ODGM01000080
[ODGM] human metagenome; G_DNA_Palatine Tonsils
10617
10692
+
Ile2
CAT
[ENA]
¢þ
>WENV180759063
ODHY01000254
[ODHY] human metagenome; G_DNA_Buccal mucosa
9040
8965
-
Ile2
CAT
[ENA]
¢þ
>WENV180807874
ODJI01014427
[ODJI] human metagenome; G_DNA_Tongue dorsum
787
712
-
Ile2
CAT
[ENA]
¢þ
>W141082103
ATSY01000002
Gammaproteobacteria
Mannheimia haemolytica D193 [ATSY]
100298
100223
-
Met
CAT
[ENA]
¡û
>W141082818
AUNK01000070
Gammaproteobacteria
Mannheimia haemolytica D35 [AUNK]
4379
4454
+
Met
CAT
[ENA]
¡û
>W141082860
AUNL01000017
Gammaproteobacteria
Mannheimia haemolytica D38 [AUNL]
15271
15346
+
Met
CAT
[ENA]
¡û
>WENV180852679
ODKW01003414
[ODKW] human metagenome; G_DNA_Tongue dorsum
5231
5306
+
Ile2
CAT
[ENA]
¢þ
>WENV180862723
ODLF01004565
[ODLF] human metagenome; G_DNA_Buccal mucosa
48
123
+
Ile2
CAT
[ENA]
¢þ
>WENV180862920
ODLF01028627
[ODLF] human metagenome; G_DNA_Buccal mucosa
48
123
+
Ile2
CAT
[ENA]
¢þ
>WENV180864087
ODLH01009890
[ODLH] human metagenome; G_DNA_Tongue dorsum
683
758
+
Ile2
CAT
[ENA]
¢þ
>WENV180977787
ODUZ01005461
[ODUZ] human metagenome; G_DNA_Tongue dorsum
3651
3726
+
Ile2
CAT
[ENA]
¢þ
>WENV180989235
ODVL01073893
[ODVL] human metagenome; G_DNA_Tongue dorsum
404
329
-
Ile2
CAT
[ENA]
¢þ
>WENV181084995
OEAX01000844
[OEAX] human metagenome; G_DNA_Tongue dorsum
10528
10603
+
Ile2
CAT
[ENA]
¢þ
>WENV181125719
OEFU01015186
[OEFU] human metagenome; G_DNA_Saliva
366
441
+
Ile2
CAT
[ENA]
¢þ
>WENV181566948
OGJJ01000569
[OGJJ] metagenome; Human gut stool
18937
18862
-
Ile2
CAT
[ENA]
¢þ
>W141285280
JANJ01000005
Gammaproteobacteria
Mannheimia granulomatis serotype A1/A6 str. PKL10 [JANJ]
207447
207522
+
Met
CAT
[ENA]
¡û
>C181075116
CP023043
Gammaproteobacteria
Mannheimia haemolytica 193 [CP023043]
1472185
1472260
+
Met
CAT
-
¡û
>C181075302
CP023047
Gammaproteobacteria
Mannheimia haemolytica 186 [CP023047]
1537429
1537504
+
Met
CAT
-
¡û
>C141005795
CP006619
Gammaproteobacteria
Mannheimia haemolytica USMARC_2286 [CP006619]
1460275
1460350
+
Met
CAT
[Ensembl]
¡û
>W1810578229
QEPN01000007
Gammaproteobacteria
Haemophilus sputorum C2002001239 [QEPN]
61312
61237
-
Met
CAT
[ENA]
¡û
>W1810579190
QEQG01000004
Gammaproteobacteria
Haemophilus sputorum C2015005473 [QEQG]
142885
142810
-
Met
CAT
[ENA]
¡û
>W1810579252
QEQH01000005
Gammaproteobacteria
Haemophilus sputorum C2015005679 [QEQH]
142885
142810
-
Met
CAT
[ENA]
¡û
>C151015006
CP006943
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1296 [CP006943]
1186218
1186293
+
Met
CAT
[Ensembl]
¡û
>C151015067
CP006944
Gammaproteobacteria
Mannheimia varigena USDA-ARS-USMARC-1312 [CP006944]
1120018
1120093
+
Met
CAT
[Ensembl]
¡û
>C151015356
CP006954
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-188 [CP006954]
1395154
1395079
-
Met
CAT
[Ensembl]
¡û
>C151015413
CP006955
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-189 [CP006955]
1475680
1475605
-
Met
CAT
[Ensembl]
¡û
>C151015448
CP006956
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-190 [CP006956]
1005035
1005110
+
Met
CAT
[Ensembl]
¡û
>W10108025
ACZX01000019
Gammaproteobacteria
Mannheimia haemolytica serotype A2 str. OVINE [ACZX]
26696
26771
+
Met
CAT
[ENA]
¡û
>W11110412
ACZX01000019
Gammaproteobacteria
Mannheimia haemolytica serotype A2 str. OVINE [ACZX]
26696
26771
+
Met
CAT
[ENA]
¡û
>W11167705
AFNK01000006
Gammaproteobacteria
Haemophilus sputorum CCUG 13788 [AFNK]
29454
29529
+
Met
CAT
[ENA]
¡û
>W121111629
ALJP01000012
Gammaproteobacteria
Haemophilus sputorum HK 2154 [ALJP]
62186
62261
+
Met
CAT
[ENA]
¡û
>C131014026
CP004752
Gammaproteobacteria
Mannheimia haemolytica USDA-ARS-USMARC-183 [CP004752]
1464920
1464995
+
Met
CAT
[Ensembl]
¡û
>C131015126
CP005383
Gammaproteobacteria
Mannheimia haemolytica M42548 [CP005383]
2000630
2000705
+
Met
CAT
[Ensembl]
¡û
>C131017622
CP006573
Gammaproteobacteria
Mannheimia haemolytica D171 [CP006573]
95162
95087
-
Met
CAT
[Ensembl]
¡û
>C131006024
CP003745
Gammaproteobacteria
Bibersteinia trehalosi USDA-ARS-USMARC-192 [CP003745]
980656
980731
+
Met
CAT
[Ensembl]
¡û
>W1610516307
JACI01000001
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
373097
373022
-
Met
CAT
[ENA]
¡û
>W1610609521
LFXV01000013
Gammaproteobacteria
Mannheimia haemolytica [LFXV]
69297
69222
-
Met
CAT
[ENA]
¡û
>W1610609816
LFYC01000009
Gammaproteobacteria
Mannheimia haemolytica [LFYC]
74131
74206
+
Met
CAT
[ENA]
¡û
>W1710611649
JACI01000001
Gammaproteobacteria
Bibersteinia trehalosi Y31 [JACI]
373097
373022
-
Met
CAT
[ENA]
¡û
>W1710730808
LFXV01000013
Gammaproteobacteria
Mannheimia haemolytica [LFXV]
69297
69222
-
Met
CAT
[ENA]
¡û
>W1710731103
LFYC01000009
Gammaproteobacteria
Mannheimia haemolytica [LFYC]
74131
74206
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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