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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235822 (83 seq.)
>W1711115577
LUAH01000038
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
60
133
+
Thr
TGT
[ENA]
¡û
>W1711115578
LUAH01000038
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
167
240
+
Thr
TGT
[ENA]
¡û
>W1711115589
LUAH01000067
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
68817
68892
+
Thr
TGT
[ENA]
¡û
>W1711506323
MKWH01000048
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
79526
79599
+
Thr
TGT
[ENA]
¡û
>W1711506324
MKWH01000048
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
79633
79706
+
Thr
TGT
[ENA]
¡û
>W1711506325
MKWH01000048
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
79739
79812
+
Thr
TGT
[ENA]
¡û
>W1711506328
MKWH01000054
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
60225
60300
+
Thr
TGT
[ENA]
¡û
>C171089489
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
1444511
1444586
+
Thr
TGT
-
¡û
>C171089538
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
3714971
3714898
-
Thr
TGT
-
¡û
>C171118423
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
1039779
1039854
+
Thr
TGT
-
¡û
>C171118486
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
3290322
3290249
-
Thr
TGT
-
¡û
>C171118487
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
3290215
3290142
-
Thr
TGT
-
¡û
>C171118488
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
3290109
3290036
-
Thr
TGT
-
¡û
>W141075076
ASZT01000539
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
3066
2993
-
Thr
TGT
[ENA]
¡û
>W141075083
ASZT01000697
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
14264
14189
-
Thr
TGT
[ENA]
¡û
>WENV183726555
PJTO01000008
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
209123
209050
-
Thr
TGT
[ENA]
¢þ
>WENV183726556
PJTO01000008
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
209016
208943
-
Thr
TGT
[ENA]
¢þ
>WENV183726557
PJTO01000008
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
208910
208837
-
Thr
TGT
[ENA]
¢þ
>WENV183726888
PJTO01000376
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
15928
15855
-
Thr
TGT
[ENA]
¢þ
>WENV183727535
PJTP01000012
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
209123
209050
-
Thr
TGT
[ENA]
¢þ
>WENV183727536
PJTP01000012
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
209016
208943
-
Thr
TGT
[ENA]
¢þ
>WENV183727537
PJTP01000012
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
208910
208837
-
Thr
TGT
[ENA]
¢þ
>WENV183727771
PJTP01000190
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
15928
15855
-
Thr
TGT
[ENA]
¢þ
>WENV183728498
PJTQ01000088
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
14017
13944
-
Thr
TGT
[ENA]
¢þ
>WENV183728499
PJTQ01000088
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
13910
13837
-
Thr
TGT
[ENA]
¢þ
>WENV183728500
PJTQ01000088
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
13804
13731
-
Thr
TGT
[ENA]
¢þ
>WENV183728803
PJTQ01000464
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
15700
15627
-
Thr
TGT
[ENA]
¢þ
>WENV183729527
PJTQ01060107
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
17
90
+
Thr
TGT
[ENA]
¢þ
>WENV183730728
PJTS01000406
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
27001
27074
+
Thr
TGT
[ENA]
¢þ
>WENV183730857
PJTS01001460
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
8676
8603
-
Thr
TGT
[ENA]
¢þ
>WENV183730858
PJTS01001460
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
8570
8497
-
Thr
TGT
[ENA]
¢þ
>WENV183730859
PJTS01001460
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
8463
8390
-
Thr
TGT
[ENA]
¢þ
>WENV183734780
PJUA01000010
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
200936
200863
-
Thr
TGT
[ENA]
¢þ
>WENV183734781
PJUA01000010
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
200829
200756
-
Thr
TGT
[ENA]
¢þ
>WENV183734782
PJUA01000010
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
200723
200650
-
Thr
TGT
[ENA]
¢þ
>WENV183735095
PJUA01000893
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
6809
6882
+
Thr
TGT
[ENA]
¢þ
>WENV183735235
PJUA01004808
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1689
1762
+
Thr
TGT
[ENA]
¢þ
>WENV183735453
PJUB01000008
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
194658
194731
+
Thr
TGT
[ENA]
¢þ
>WENV183735454
PJUB01000008
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
194765
194838
+
Thr
TGT
[ENA]
¢þ
>WENV183735455
PJUB01000008
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
194871
194944
+
Thr
TGT
[ENA]
¢þ
>WENV183735694
PJUB01000655
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
6809
6882
+
Thr
TGT
[ENA]
¢þ
>WENV183735868
PJUB01006676
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
74
1
-
Thr
TGT
[ENA]
¢þ
>WENV183736454
PJUC01004532
[PJUC] soil metagenome; Soil enriched on filter paper
1273
1200
-
Thr
TGT
[ENA]
¢þ
>WENV183736455
PJUC01004532
[PJUC] soil metagenome; Soil enriched on filter paper
1166
1093
-
Thr
TGT
[ENA]
¢þ
>WENV183736456
PJUC01004532
[PJUC] soil metagenome; Soil enriched on filter paper
1060
987
-
Thr
TGT
[ENA]
¢þ
>WENV183736510
PJUC01007532
[PJUC] soil metagenome; Soil enriched on filter paper
186
113
-
Thr
TGT
[ENA]
¢þ
>WENV183736627
PJUC01026522
[PJUC] soil metagenome; Soil enriched on filter paper
460
387
-
Thr
TGT
[ENA]
¢þ
>WENV183736800
PJUD01000034
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
8123
8196
+
Thr
TGT
[ENA]
¢þ
>WENV183736801
PJUD01000034
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
8230
8303
+
Thr
TGT
[ENA]
¢þ
>WENV183736802
PJUD01000034
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
8336
8409
+
Thr
TGT
[ENA]
¢þ
>WENV183736959
PJUD01000134
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
79186
79259
+
Thr
TGT
[ENA]
¢þ
>WENV183738783
PJUE01000189
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
63953
64026
+
Thr
TGT
[ENA]
¢þ
>WENV183738990
PJUE01000770
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
6525
6452
-
Thr
TGT
[ENA]
¢þ
>WENV183738991
PJUE01000770
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
6418
6345
-
Thr
TGT
[ENA]
¢þ
>WENV183738992
PJUE01000770
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
6312
6239
-
Thr
TGT
[ENA]
¢þ
>WENV183740861
PJUF01013760
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
74
1
-
Thr
TGT
[ENA]
¢þ
>WENV183741184
PJUF01052445
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
75
2
-
Thr
TGT
[ENA]
¢þ
>WENV183741190
PJUF01052869
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3
76
+
Thr
TGT
[ENA]
¢þ
>WENV183741394
PJUG01000003
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
331333
331406
+
Thr
TGT
[ENA]
¢þ
>WENV183741444
PJUG01000013
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
16091
16018
-
Thr
TGT
[ENA]
¢þ
>WENV183741886
PJUH01000002
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
331333
331406
+
Thr
TGT
[ENA]
¢þ
>WENV183741939
PJUH01000012
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
16091
16018
-
Thr
TGT
[ENA]
¢þ
>WENV183742488
PJUI01000004
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
331333
331406
+
Thr
TGT
[ENA]
¢þ
>WENV183742589
PJUI01000019
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
16091
16018
-
Thr
TGT
[ENA]
¢þ
>WENV183742971
PJUJ01000002
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
658659
658586
-
Thr
TGT
[ENA]
¢þ
>WENV183743038
PJUJ01000012
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1331
1258
-
Thr
TGT
[ENA]
¢þ
>WENV183743316
PJUJ01000447
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
175
102
-
Thr
TGT
[ENA]
¢þ
>WENV183743805
PJUK01000003
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
331333
331406
+
Thr
TGT
[ENA]
¢þ
>WENV183743844
PJUK01000011
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
16091
16018
-
Thr
TGT
[ENA]
¢þ
>W1910378056
FUKX01000027
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
14122
14049
-
Thr
TGT
[ENA]
¡û
>W1910664357
MCAQ01000004
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
28722
28649
-
Thr
TGT
[ENA]
¡û
>W1910664366
MCAQ01000012
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
525097
525170
+
Thr
TGT
[ENA]
¡û
>W1910664367
MCAQ01000012
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
525204
525277
+
Thr
TGT
[ENA]
¡û
>W1910664368
MCAQ01000012
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
525310
525383
+
Thr
TGT
[ENA]
¡û
>W1810503656
QBKH01000003
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
801032
801105
+
Thr
TGT
[ENA]
¡û
>W1810503678
QBKH01000010
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
14100
14027
-
Thr
TGT
[ENA]
¡û
>C151047335
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
897511
897586
+
Thr
TGT
[Ensembl]
¡û
>C151047384
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
3267847
3267774
-
Thr
TGT
[Ensembl]
¡û
>C151047385
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
3267751
3267676
-
Thr
TGT
[Ensembl]
¡û
>W1511590245
LBGU01000023
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
15776
15701
-
Thr
TGT
[ENA]
¡û
>W1511590278
LBGU01000035
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
99504
99431
-
Thr
TGT
[ENA]
¡û
>W1511590279
LBGU01000035
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
99397
99324
-
Thr
TGT
[ENA]
¡û
>W1511590280
LBGU01000035
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
99291
99218
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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