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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235891 (18 seq.)
>WENV180301355
OBJE01012600
[OBJE] human gut metagenome; faeces
1271
1347
+
Arg
TCT
[ENA]
¢þ
>WENV181000553
ODVV01000164
[ODVV] human metagenome; G_DNA_Stool
75002
75078
+
Arg
TCT
[ENA]
¢þ
>WENV182008444
OHBJ01000888
[OHBJ] human gut metagenome; faeces
5329
5253
-
Arg
TCT
[ENA]
¢þ
>WENV182074130
OHFP01002486
[OHFP] human gut metagenome; feces
3673
3747
+
Arg
TCT
[ENA]
¢þ
>WENV182241934
OHSG01004228
[OHSG] human gut metagenome; feces
3906
3982
+
Arg
TCT
[ENA]
¢þ
>WENV182249633
OHSQ01002831
[OHSQ] human gut metagenome; feces
3019
2943
-
Arg
TCT
[ENA]
¢þ
>WENV182534410
OIXG01000619
[OIXG] human gut metagenome; faeces
15957
15881
-
Arg
TCT
[ENA]
¢þ
>WENV182614558
OJKC01000143
[OJKC] metagenome; faeces
69219
69143
-
Arg
TCT
[ENA]
¢þ
>WENV183024576
OLFT01000587
[OLFT] human gut metagenome; faeces
16302
16378
+
Arg
TCT
[ENA]
¢þ
>WENV183030962
OLFX01000782
[OLFX] human gut metagenome; faeces
29427
29351
-
Arg
TCT
[ENA]
¢þ
>WENV183051761
OLGJ01002209
[OLGJ] human gut metagenome; faeces
6745
6669
-
Arg
TCT
[ENA]
¢þ
>WENV183389386
OLZA01046306
[OLZA] human gut metagenome; feces
500
574
+
Arg
TCT
[ENA]
¢þ
>WENV183390068
OLZB01005798
[OLZB] human gut metagenome; feces
2661
2735
+
Arg
TCT
[ENA]
¢þ
>WENV183530601
OOAA01004477
[OOAA] human gut metagenome; human gut
4209
4285
+
Arg
TCT
[ENA]
¢þ
>WENV183569377
OOCB01035543
[OOCB] human gut metagenome; human gut
962
1038
+
Arg
TCT
[ENA]
¢þ
>WENV183573968
OOCH01001735
[OOCH] human gut metagenome; human gut
1821
1745
-
Arg
TCT
[ENA]
¢þ
>WENV183633371
OOIG01000434
[OOIG] human gut metagenome; human gut
14333
14409
+
Arg
TCT
[ENA]
¢þ
>WENV183710635
PDWI01050527
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2828
2902
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK